Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., peptidase, M23/M37 family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 76.6 bits (187), Expect = 7e-19
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 2/118 (1%)

Query: 194 WLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHN 253
           WL    G     F+     +KGID  G+ G  VVATA G V ++GN   GYG L+ I H 
Sbjct: 178 WLSSPYGLRNDPFNGRRTMHKGIDFTGREGAKVVATAAGVVTWAGNMF-GYGELVEIDHG 236

Query: 254 EHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSG-TNSVRLHFEIRYQGKSVNPKRYL 310
               + Y HN  L    G  V  G+ IA+MGS+G +    +H+E+   G+ ++P++++
Sbjct: 237 NGLRTRYGHNKALSVAVGDVVAKGETIASMGSTGRSTGAHVHYEVLRGGQQIDPQKFV 294