Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., lipoprotein NlpD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  229 bits (584), Expect = 6e-65
 Identities = 131/310 (42%), Positives = 178/310 (57%), Gaps = 23/310 (7%)

Query: 8   LGLLLFCSLLF---GCT--APTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYL 62
           +GLLL  SLL    GC+  A  PAPV  L K ++K  +G  +G  Y+VKKGDTLY I++ 
Sbjct: 4   VGLLLNLSLLLLLAGCSFQASRPAPVESLSKHHSKQNKGHIKGESYKVKKGDTLYSISWA 63

Query: 63  TDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKA 122
             KD  ++   N L   +TI+PGQ + L                 T   + ++ AS    
Sbjct: 64  VGKDYAEIAKINQLDKSFTIYPGQVLYL-----------------TYDHSQNSKASTILG 106

Query: 123 ATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVN-V 181
              +        +S+ K   +  +  + L+ +   KT+DQ     Y     +Q  N + V
Sbjct: 107 GINSANKGLYQLNSSKKQYVSDDSAVEGLSSEPQKKTLDQKAKPAYSATSSQQRFNSSIV 166

Query: 182 AKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNAL 241
           A      + +++W WP +G++I  +SA +QGNKGI IAG+RG  + A ADG VVY+G+AL
Sbjct: 167 APTSTLPDSVSQWQWPVRGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSAL 226

Query: 242 RGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQG 301
           RGYGNL+IIKH++ YLSAYAH DQ+L  E Q V AGQ IA MGS+GTN V L FEIRY G
Sbjct: 227 RGYGNLVIIKHSDDYLSAYAHADQILVDEKQHVLAGQTIAKMGSTGTNQVMLRFEIRYHG 286

Query: 302 KSVNPKRYLP 311
           +SVNP  YLP
Sbjct: 287 QSVNPLNYLP 296