Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., peptidase, M23/M37 family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.5 bits (223), Expect = 5e-23
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 22/210 (10%)

Query: 115 TSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEY----VE 170
           T  S  K  TT    Q V          N   + + LT  +  +T++ TK  E     +E
Sbjct: 140 TQTSKQKQLTTLMAEQQVQSKR-----LNQEQDQRQLTLNELQRTLN-TKGAELEQLQIE 193

Query: 171 PVGKQNVNVNVAKA---KPS----DEKIAKWLWPTKGRVIKNFSAGDQGN---KGIDIAG 220
               + V     KA    PS    D++  K  WPTKGRV  +F +   G    KG  ++ 
Sbjct: 194 EASLKRVVEQALKAMRDNPSMEGFDKQGGKLKWPTKGRVSASFGSPRSGQVVWKGTMLSA 253

Query: 221 QRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKI 280
             GQ + A + G V+Y+ + L+G+G +++I H + Y+S Y H   LL   G+ V+ G+ I
Sbjct: 254 PEGQNIRAVSGGKVIYA-DWLKGFGMVMVIDHGKGYMSLYGHAQTLLKSPGEMVKTGEAI 312

Query: 281 ATMG-SSGTNSVRLHFEIRYQGKSVNPKRY 309
           A +G S G     L+FEIRY+G++V+P +Y
Sbjct: 313 ALVGRSGGQTEPGLYFEIRYKGQAVDPAKY 342