Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., peptidase M23 from Herbaspirillum seropedicae SmR1

 Score =  180 bits (457), Expect = 4e-50
 Identities = 109/288 (37%), Positives = 153/288 (53%), Gaps = 37/288 (12%)

Query: 47  YYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGA 106
           YY VKKGDTLY IA    ++  D++++N+L  P  I   Q +++  P+  P      G A
Sbjct: 57  YYTVKKGDTLYRIALEAGQNWRDIVAWNNLTNPNDIKVDQTLRVAPPDRAP------GTA 110

Query: 107 ATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTK 166
            T A+A+S +A +      A        S+    V  GS  +     K P       + +
Sbjct: 111 QTAAIAASPAAGLEVKPLGAP-----GTSAPAAPVPVGSNKTGPRGDKRPYSESALAELE 165

Query: 167 EYVEPVGKQNVNVNVAKAKPS-----------------------DEKIAKWLWPTKGRVI 203
           +   P        +VA A PS                       D++   W+WP +G+V+
Sbjct: 166 KPDAPSAPAASGTSVASAAPSAPAKAEQPHAADKPAAAASQAAADDEGVSWMWPAEGKVV 225

Query: 204 KNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIIIKHNEHYLSAYAHN 263
             F  G    KG+DIAG+ GQAV+A   G V+Y+G+ +RGYGNL+IIKH  + LSAYAHN
Sbjct: 226 GTFEGG---KKGVDIAGKAGQAVLAAGAGKVMYAGSGIRGYGNLVIIKHTSNLLSAYAHN 282

Query: 264 DQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP 311
             +L KEGQ+V  GQKIA MG S +++V+LHFEIR QGK V+P +YLP
Sbjct: 283 QTILVKEGQSVTKGQKIAEMGKSDSDTVKLHFEIRQQGKPVDPSKYLP 330