Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., peptidase, M23/M37 family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 75.1 bits (183), Expect = 4e-18
 Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 18/238 (7%)

Query: 85  GQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSS------NT 138
           G ++    P    P      GA  V  A+ST A  A AA            +       T
Sbjct: 364 GPRVPSGQPVTRRPGMTPAEGAQAVQNAASTFAPSAAAAQGVPAPSAPQPPTLPGVPAYT 423

Query: 139 KNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVNVAKAKPSDEKI-AKWLWP 197
             V    T  Q  T+  PV  V    +     PVG     +      P+   +  +  WP
Sbjct: 424 PGVPGMVTPPQGATQ--PVPPVASPPSSPAGAPVGMPATRLASPVGGPAPAPLPGRLAWP 481

Query: 198 TKGRVIKNFS------AGDQG-NKGIDIAGQRGQAVVATADGTVVYSGNALRGYGNLIII 250
             G + + F        G++  + G+D+A   G  V A  DG VV++G     YGNL+++
Sbjct: 482 VAGHISEGFGWRSDPVTGERAWHPGVDLAAAEGSPVRACWDGKVVFAGEQ-GDYGNLVVV 540

Query: 251 KHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSG-TNSVRLHFEIRYQGKSVNPK 307
           +H   + S Y HN  L  + G  V +G ++A  G++G  N   +HFE+R    ++NP+
Sbjct: 541 EHAGGWRSYYGHNAALSVRAGDVVASGSELAKAGATGRANGPHVHFEVRLGELALNPE 598