Pairwise Alignments

Query, 311 a.a., murein hydrolase activator NlpD from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., peptidase M23B (RefSeq) from Shewanella sp. ANA-3

 Score =  241 bits (616), Expect = 1e-68
 Identities = 138/310 (44%), Positives = 186/310 (60%), Gaps = 23/310 (7%)

Query: 8   LGLLLFCSL---LFGCT--APTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYL 62
           +GLLL  SL   L GC+  A  PAPV  L   Y+K  +G  + + Y+VKKGDTLY I++ 
Sbjct: 4   VGLLLNLSLVLLLAGCSFQASRPAPVESLSHSYSKHNKGHIKSNSYKVKKGDTLYSISWA 63

Query: 63  TDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKA 122
             KD  ++   N L   YTI+PGQ   L+L N       G  G  +  +  S SAS  + 
Sbjct: 64  AGKDFAEIAKINQLDKSYTIYPGQI--LYLTNDR-----GQNGKGSTTLGGSNSASKGQN 116

Query: 123 ATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVN-V 181
              +   Q+ S +S+ KN          L+ +   KT+DQ     Y     +Q++N + V
Sbjct: 117 KANSVDKQSASNNSSAKN----------LSSEQQKKTLDQKAKPAYSATSSQQSINPSIV 166

Query: 182 AKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNAL 241
           A      + +++W WP +G++I  +SA +QGNKGI IAG+RG  + A ADG VVY+G+AL
Sbjct: 167 APTSTLPDSVSQWQWPVRGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSAL 226

Query: 242 RGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQG 301
           RGYGNL+IIKH++ YLSAYAH DQ+L +E Q V AGQ +A MGS+GTN V L FEIRY G
Sbjct: 227 RGYGNLVIIKHSDDYLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHG 286

Query: 302 KSVNPKRYLP 311
           +SVNP  YLP
Sbjct: 287 QSVNPLNYLP 296