Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., tRNA pseudouridine(13) synthase TruD from Rhodanobacter denitrificans FW104-10B01

 Score =  234 bits (596), Expect = 3e-66
 Identities = 139/336 (41%), Positives = 197/336 (58%), Gaps = 8/336 (2%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           +  L +  G+P   A+L++ PE FQV E+LGY   G GEH ++ + K G NT +VA ELA
Sbjct: 1   MQELPHAFGEPPLTARLRSAPEDFQVEEILGYDADGAGEHALLWVEKRGANTDWVARELA 60

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
           K  GVP  AV +AGLKDRHAVT Q  SV L     PD+SAF   +  +++L  TRH +KL
Sbjct: 61  KFAGVPPVAVGYAGLKDRHAVTRQTFSVQLAGKPDPDWSAF--PHAEVKVLAATRHSRKL 118

Query: 125 RPGDLQGNEFVVTLSEV-SDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGR 183
           + G L+GN FV+ L EV  D  A    L+ +A  GVPNYFG QRFGR G N+++AR    
Sbjct: 119 KRGALRGNRFVLVLREVQGDRGAAEQALQQIAARGVPNYFGEQRFGREGGNVAQAR--AM 176

Query: 184 DNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGDI--ALAEQQMFNVDGDL 241
              R  ++ QRS  LSAARS IFN +++ R+E+G +   ++G+I      +  F  +   
Sbjct: 177 FGGRRVDRGQRSFLLSAARSHIFNAVLAARVERGAWDSPLDGEIWSLAGSRSWFGPEPFT 236

Query: 242 ALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAI 301
            L  +RL   ++  S  L G    P+ G+A  LE+    A  DL A +   RM  +RR +
Sbjct: 237 ELLAERLARADIHPSGPLWGQGEPPSQGEAGALEREIGAANDDLAAGLAAARMDQERRPL 296

Query: 302 ALKAQNLSWQ-VQEDQITLRFSLDAGSFATSLVREL 336
            L  ++L W+ + +D + L F L AG++AT +VRE+
Sbjct: 297 RLLPKDLRWRWLGDDALELSFELPAGAYATVVVREV 332