Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., tRNA pseudouridine 13 synthase (EC 4.2.1.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  241 bits (614), Expect = 3e-68
 Identities = 141/343 (41%), Positives = 195/343 (56%), Gaps = 7/343 (2%)

Query: 3   DILSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANE 62
           ++L P AY  G+P   A LKA  E FQV+EVL   LTG GEHL + + K G NT   A  
Sbjct: 5   ELLGPRAY--GEPLGSAVLKATAEDFQVDEVLDIPLTGDGEHLWIWVEKRGLNTEEAARR 62

Query: 63  LAKACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDK 122
           +AKA GVP R VS+AGLKDR A+T QW S+ LP    PD SA  A+  +++IL+  RH +
Sbjct: 63  IAKAAGVPLRTVSYAGLKDRQALTRQWFSIQLPGKADPDLSA--AENDTLKILKTARHRR 120

Query: 123 KLRPGDLQGNEFVVTLSEVS-DVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRW 181
           KL+ G    N F + L++ + D  A+ +RL+ +   G+PNYFG+QRFG  G N+ +AR W
Sbjct: 121 KLQRGAHSANGFTLRLTQFNGDTTAIDARLQQIVRQGIPNYFGAQRFGHDGGNVVDARAW 180

Query: 182 GRDNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNVDGD 240
                    +N RS  LS ARS++FN++++ R+  G + +   GD +A  + + F   G+
Sbjct: 181 AARKALPEQRNVRSRLLSTARSFLFNRVLAARVADGTWQQAQVGDLLAFTDSRSFFPAGE 240

Query: 241 LALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRA 300
               D RL   ++  +    G+   P +G    LEQA    E DL   +    M H+RR 
Sbjct: 241 AECSDPRLAILDLHPTGPQWGEGPSPAAGATFELEQAIAAGEADLRDWLINAGMSHERRI 300

Query: 301 IALKAQNLSWQV-QEDQITLRFSLDAGSFATSLVRELIEEIPV 342
           + L    LSW   Q D + L F L AG FAT LVREL+E +PV
Sbjct: 301 LRLPIGGLSWHYPQPDILQLEFVLPAGCFATVLVRELVELVPV 343