Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., Uncharacterized conserved protein from Pseudomonas stutzeri RCH2

 Score =  205 bits (522), Expect = 1e-57
 Identities = 129/337 (38%), Positives = 186/337 (55%), Gaps = 7/337 (2%)

Query: 4   ILSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANEL 63
           +L P A+  G+P   A LKA+ E FQV+EVL   L+G GEHL + + K   NT   A  +
Sbjct: 6   LLGPRAH--GEPCGSAVLKAVAEDFQVDEVLDIPLSGEGEHLWLWVEKRNLNTEEAAKRI 63

Query: 64  AKACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKK 123
           A+A GVP + +S+AGLKDR A+T QW S+HLP    PD +A  A+   + IL+ TRH +K
Sbjct: 64  ARAAGVPLKMISYAGLKDRQALTRQWFSLHLPGKADPDLAA--AESDGLAILKRTRHQRK 121

Query: 124 LRPGDLQGNEFVVTLSEV-SDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWG 182
           L+ G    N F + L  +  + AA+ +RL+ +   GVPNYFG QRFG  G NL  AR + 
Sbjct: 122 LQRGAHSANGFRLRLRALQGEHAALDARLQRIKVNGVPNYFGLQRFGYDGGNLHGAREYA 181

Query: 183 RDNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNVDGDL 241
                   +N RS  LSA RS++FN++++ R+  G + +   GD +A  + + F   G  
Sbjct: 182 AKGELPVQRNLRSRLLSAGRSYLFNKVLAARVADGSWNQARVGDLLAFTDSRSFFPAGAA 241

Query: 242 ALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAI 301
              D RL   ++  +  L G +  P   +   LE A    +  L+  +    M+H+RR +
Sbjct: 242 ECNDPRLAILDLHPTGPLWGIDGSPAGDEIQALENAVAATDSALVNWLAQAGMKHERRIL 301

Query: 302 ALKAQNLSWQVQE-DQITLRFSLDAGSFATSLVRELI 337
            L    LSW   E D + L F L  G FAT++VREL+
Sbjct: 302 RLPIGGLSWHYPEPDILQLEFVLPTGCFATAVVRELV 338