Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., tRNA pseudouridine synthase D, TruD from Pseudomonas syringae pv. syringae B728a

 Score =  220 bits (560), Expect = 5e-62
 Identities = 138/343 (40%), Positives = 190/343 (55%), Gaps = 7/343 (2%)

Query: 3   DILSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANE 62
           ++L P AY  G+   +A LKA  E FQV+EVL   L+G GEHL + + K G NT   A  
Sbjct: 5   ELLGPRAY--GEALGRAVLKATAEDFQVDEVLDIPLSGDGEHLWLWVEKRGLNTEEAARR 62

Query: 63  LAKACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDK 122
           LA+A GV  R VS+AGLKDR A+T QW S+ LP    PD SA  AQ  +++IL+  RH +
Sbjct: 63  LARAAGVQLRTVSYAGLKDRQALTRQWFSIQLPGKADPDLSA--AQDDTLQILKSGRHKR 120

Query: 123 KLRPGDLQGNEFVVTLSEV-SDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRW 181
           KL+ G    N F + L+++ +D  A+  RLET+A  G+PNYFG+QRFG  G NL EAR +
Sbjct: 121 KLQRGAHAANGFTLRLTQLDADKDALNQRLETIARQGIPNYFGAQRFGYQGGNLGEARDY 180

Query: 182 GRDNVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNVDGD 240
                    +  RS  LS ARS++FN++++ R+  G + +   GD +A  + + F   G 
Sbjct: 181 AARKALPEQRAVRSRLLSTARSYLFNRVLAARVADGSWQKAQVGDLLAFTDSRSFFPAGV 240

Query: 241 LALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRA 300
               D RL   ++  +    G+   P  G    LE    D E  L   +    M H+RR 
Sbjct: 241 DECSDPRLAILDLHPTGPQWGEGPSPAGGATAALENTVADDESVLRDWLVRAGMEHERRI 300

Query: 301 IALKAQNLSWQVQE-DQITLRFSLDAGSFATSLVRELIEEIPV 342
           + L    L+W   E D + L F L  G FAT LVRELI+ +PV
Sbjct: 301 LRLPIGRLTWHYPESDILQLEFVLPPGCFATVLVRELIDLVPV 343