Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  224 bits (570), Expect = 4e-63
 Identities = 135/340 (39%), Positives = 198/340 (58%), Gaps = 14/340 (4%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           ++ L YL GKP   A ++     FQV E+L +   G GEH ++ IRK G NT+ VA  ++
Sbjct: 1   MTELTYLYGKPAVSADIRTHNSDFQVKEILPFLPDGEGEHHLLHIRKDGLNTAQVAEMIS 60

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
           +   V  + V++AG KD++A+TEQW  V +P  ETPD++A   +   +++L   RH KKL
Sbjct: 61  RFAKVHPKEVTFAGQKDKNAITEQWFGVRIPGKETPDWAAMSNE--QMQVLSFARHGKKL 118

Query: 125 RPGDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRD 184
           R G L GN F + L  VSD  A+++RLE V + GVPNYFG QRFG  G NL +AR+   +
Sbjct: 119 RTGALSGNRFTLVLRNVSDPEALVARLELVRDGGVPNYFGEQRFGHDGGNLVKARQM-FE 177

Query: 185 NVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARF----IEGDIAL--AEQQMFNVD 238
             + +++N+RSLYLSA RS +FNQ+ S R+     ARF    IEGD  +    +  F  +
Sbjct: 178 GRKVKDRNKRSLYLSAVRSELFNQVASARL-----ARFGTAPIEGDCVMLSGSRSFFTAE 232

Query: 239 GDLALWDQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDR 298
                 ++RL   ++ +SA L G       G A  LE + L A       +    +  +R
Sbjct: 233 SWDDSLNKRLAEQDIQLSAPLWGRGEQLAKGDAAALESSVLAAYELERNGLEKEGLTQER 292

Query: 299 RAIALKAQNLSWQVQEDQITLRFSLDAGSFATSLVRELIE 338
           RA+ L+ + LS+++  D +TL F L AG+FATS++REL E
Sbjct: 293 RALLLRPEQLSFKLDGDALTLDFCLPAGAFATSVLRELCE 332