Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  240 bits (612), Expect = 5e-68
 Identities = 135/338 (39%), Positives = 202/338 (59%), Gaps = 11/338 (3%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           ++PL YL G+P A A L+     F V E+L +  TG GEH M+ IRK G NT+ VA  L+
Sbjct: 1   MTPLHYLYGQPEASADLRTYNSDFIVQEILPFLPTGEGEHHMLHIRKEGLNTADVARMLS 60

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
              GV  + V++AG KDRHA+TEQW  V +P    PD+ +  ++   + +L   RH KKL
Sbjct: 61  SFAGVHPKEVTFAGQKDRHAITEQWFGVRIPGKSMPDWQSLNSE--QLTVLSSARHGKKL 118

Query: 125 RPGDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRD 184
           R G L GN F +TL  VSD+ A++ R+E +   GVPNYFG QRFG  G NL   R+    
Sbjct: 119 RTGALAGNRFTLTLRAVSDMDALVRRIELIKATGVPNYFGEQRFGHDGKNLIFGRQMLSG 178

Query: 185 NVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNVDGDLAL 243
             + +++N+RS+YLSA RS++FNQ+VS+R+      + ++GD + LA  + + V      
Sbjct: 179 KKKVKDRNKRSIYLSAVRSYLFNQVVSERLRLHQL-KTLDGDCVMLAGSKSYFVANP--- 234

Query: 244 WDQ----RLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRR 299
           WD+    RL   ++ +SA + G     +  +AL  EQ      P+ +A +    +  +RR
Sbjct: 235 WDESLYGRLAENDIQLSAPMWGRGLALSEAEALAFEQGVCGQYPEDLAGLEQAGLNQERR 294

Query: 300 AIALKAQNLSWQVQEDQITLRFSLDAGSFATSLVRELI 337
            + L  Q LS+++QED + ++F+L AGSFATS++REL+
Sbjct: 295 PLLLAPQQLSYEIQEDTLVIKFALPAGSFATSVLRELV 332