Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

 Score = 55.1 bits (131), Expect = 3e-12
 Identities = 45/163 (27%), Positives = 70/163 (42%), Gaps = 18/163 (11%)

Query: 21  LKALPEHFQVNEV------------LGYSLTG--HGEHLMVRIRKTGENTSFVANELAKA 66
           LK  PE F V E+            +G+      HG  +   + KT  NT     ++ +A
Sbjct: 59  LKKYPEDFIVEEITPEGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRA 118

Query: 67  CGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRP 126
                +   +AG KD+ AVT Q         E  +          I I +V + +KKLR 
Sbjct: 119 TKTKRKNFGFAGTKDKFAVTTQRFGCFGLKKEQLEN----INIKDIVIRDVQKTNKKLRM 174

Query: 127 GDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFG 169
           G L GN+F + + +++     + R+  +    V NY+G QRFG
Sbjct: 175 GGLWGNKFTIKIRDLNLSEKEIKRISDLKLDYVLNYYGIQRFG 217



 Score = 27.3 bits (59), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 195 SLYLSAARSWIFNQIVSKRIEQGCFARFIEGDI 227
           S++++A ++++FN++++KR + G     +EGDI
Sbjct: 305 SMFVNAYQAYLFNEMINKRFDYGFDE--LEGDI 335