Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis JJ

 Score = 73.9 bits (180), Expect = 7e-18
 Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 9/152 (5%)

Query: 20  KLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELAKACGVPSRAVSWAGL 79
           K +   E F V E+L Y L  +G + + +++K G       + L+K   VP++ + + GL
Sbjct: 2   KFRQKHEDFIVTEILDYELNDYGNYFLYKLQKNGIENLKAISYLSKNFEVPTKEIGYCGL 61

Query: 80  KDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRPGDLQGNEFVVTLS 139
           KDRHA+T Q++S+        ++        ++++  V   +K L+ G L GN F +   
Sbjct: 62  KDRHAITTQYVSI------PKEYGKLSLDEDNLKLEYVGTIEKPLKIGRLYGNRFEIIAR 115

Query: 140 EV--SDVAAVLSRLETVAELGVPNYFGSQRFG 169
            +   +   +   + T++  G PNY+  QRFG
Sbjct: 116 AIDKDEFLKIADNIRTLSS-GAPNYYDDQRFG 146