Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis JJ

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 21  LKALPEHFQVNEV------------LGYSLTG--HGEHLMVRIRKTGENTSFVANELAKA 66
           LK  PE F V E+            +G+      HG  +   + KT  NT     ++ +A
Sbjct: 59  LKKYPEDFIVEEITPKGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRA 118

Query: 67  CGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRP 126
                +   +AG KD+ AVT Q         E  +          I I +V + +KKLR 
Sbjct: 119 TKTKRKNFGFAGTKDKFAVTTQRFGCFGLKKEQLEN----INIKDIVIRDVQKSNKKLRM 174

Query: 127 GDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFG 169
           GDL GN+F + + +++     + R+  +    V NY+G QRFG
Sbjct: 175 GDLWGNKFTIKIRDLNLSKDEIKRISDLKLDYVLNYYGIQRFG 217



 Score = 29.3 bits (64), Expect = 2e-04
 Identities = 12/33 (36%), Positives = 26/33 (78%), Gaps = 2/33 (6%)

Query: 195 SLYLSAARSWIFNQIVSKRIEQGCFARFIEGDI 227
           S++++A ++++FN++++KR + G  A  +EGDI
Sbjct: 305 SMFVNAYQAYLFNEMINKRFDYGFDA--LEGDI 335