Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  217 bits (553), Expect = 3e-61
 Identities = 137/340 (40%), Positives = 197/340 (57%), Gaps = 14/340 (4%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           +S L YL GKPT  A L+ +   F V E+L +S +G GEH +V IRK G NT  VA  LA
Sbjct: 1   MSELHYLYGKPTGTADLRTVNSDFIVKEILPFSPSGEGEHHLVHIRKDGLNTVQVAEMLA 60

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
           K   V  + V++AG KD++A+TEQW  + +P  ETP +    +    + +L  +RH KKL
Sbjct: 61  KFAKVHPKEVTYAGQKDKNAITEQWFGIRIPGKETPAWIELNSD--RLTVLSSSRHSKKL 118

Query: 125 RPGDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRD 184
           R G L GN F++TL  V++V  ++SR+E V+++GVPNYFG QRFG  G NL   R+    
Sbjct: 119 RIGALLGNRFILTLRNVTNVEDIISRIEKVSQIGVPNYFGEQRFGHDGKNLVLGRQM-LA 177

Query: 185 NVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNVDGDLAL 243
             + +++N+RS+YLSA RS +FN +VS R+      R + GD + LA  + F V  +   
Sbjct: 178 GKKVKDRNKRSMYLSAVRSHLFNTVVSYRLTH-YGTRPLAGDCVMLAGSKSFFVTPE--- 233

Query: 244 WD----QRLQAGEVAISAALAGDNALPTSGQALPLE-QAELDAEPDLMALIRGNRMRHDR 298
           WD    +RL   ++ +SA L G   +   G+A  +E QA  D   D   L     +  +R
Sbjct: 234 WDLVVLKRLIEKDIQLSAPLWGRGKMLPQGEAAEVETQAMADLTEDCYGLEHAG-LEQER 292

Query: 299 RAIALKAQNLSWQVQEDQITLRFSLDAGSFATSLVRELIE 338
           R + L+ Q L  +   D + L F L AG FATSL+REL++
Sbjct: 293 RPLLLEPQGLKHEQTSDGLVLEFILPAGCFATSLLRELVD 332