Pairwise Alignments

Query, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., tRNA pseudouridine synthase D, TruD (RefSeq) from Shewanella sp. ANA-3

 Score =  223 bits (568), Expect = 6e-63
 Identities = 137/339 (40%), Positives = 198/339 (58%), Gaps = 12/339 (3%)

Query: 5   LSPLAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELA 64
           +S L YL GKPTA A L+ +   F V E+L +S +G GEH +V IRK G NT  VA  LA
Sbjct: 1   MSELHYLYGKPTATADLRTVNSDFIVKEILPFSPSGEGEHHLVHIRKDGLNTVQVAEMLA 60

Query: 65  KACGVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKL 124
           K   V  + V++AG KD++A+TEQW  + +P  ETP +S   ++   + IL  +RH KKL
Sbjct: 61  KFAKVHPKEVTYAGQKDKNAITEQWFGIRIPGKETPAWSELNSE--RLTILSSSRHSKKL 118

Query: 125 RPGDLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRD 184
           R G L GN F++TL  V++V  ++SR+E V+++GVPNYFG QRFG  G NL   R+    
Sbjct: 119 RIGALLGNRFILTLRNVTNVEDIISRIEKVSQIGVPNYFGEQRFGHDGKNLVMGRQM-LA 177

Query: 185 NVRSRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGDIALAEQQMFNVDGDLALW 244
             + +++N+RS+YLSA RS +FN +VS R+            + LA  + F V  +   W
Sbjct: 178 GKKVKDRNKRSMYLSAVRSNLFNTVVSYRLANHGTKPLAGDCVMLAGSKSFFVTPE---W 234

Query: 245 D----QRLQAGEVAISAALAGDNALPTSGQALPLEQ-AELDAEPDLMALIRGNRMRHDRR 299
           D    +RL   ++ +SA L G   +   G+A  +E  A  +   D   L     +  +RR
Sbjct: 235 DLVVLKRLIEKDIQLSAPLWGRGKMLPQGEAAEVETLAMAELSEDCYGLEHAG-LEQERR 293

Query: 300 AIALKAQNLSWQVQEDQITLRFSLDAGSFATSLVRELIE 338
            + L+ Q L ++  ED + L F L AGSFATSL+REL++
Sbjct: 294 PLLLEPQGLKYEQTEDGLVLEFILPAGSFATSLLRELVD 332