Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., DNA primase, catalytic core from Pseudomonas stutzeri RCH2

 Score =  473 bits (1217), Expect = e-137
 Identities = 277/646 (42%), Positives = 381/646 (58%), Gaps = 78/646 (12%)

Query: 1   MAGHIPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYH 60
           MAG IP+SFIDDLL R DIV+V+ +R++LKK GKNYSA CPFH EKTPSFSVS +KQFY+
Sbjct: 1   MAGLIPQSFIDDLLNRSDIVEVVGSRIQLKKAGKNYSALCPFHKEKTPSFSVSPDKQFYY 60

Query: 61  CFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDK 120
           CFGCGA GNA+ FVM++++++FP+A+EELA   G+EV  E+        K+ P    +  
Sbjct: 61  CFGCGAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPHEDSG-----RKHKPRQPVDSP 115

Query: 121 RSLYDLMGSIAQFYRQQLKV-PANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 179
             LY L+ + A +YRQ LK  P  K A+EYLK RGLSG I + FG+G+    WD + ++ 
Sbjct: 116 --LYPLLAAAADYYRQALKSHPTRKSAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHL 173

Query: 180 GQQRSSEDMLVTAGMLIEN-DNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYL 238
           G     +  L+ AG+LIEN +NG+RYDRFR RVMFPIRD RGRVI FGGR+     PKYL
Sbjct: 174 GGDALQQKALIDAGLLIENAENGKRYDRFRDRVMFPIRDSRGRVIAFGGRVLGDDKPKYL 233

Query: 239 NSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTG 298
           NSPETP+FHKG+ELYGLYE  Q  R+  +I+VVEGYMDV+ALAQ G+  +VA+LGT+T+ 
Sbjct: 234 NSPETPVFHKGQELYGLYEARQTNRDLDEIMVVEGYMDVIALAQQGLRNAVATLGTATSE 293

Query: 299 DHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVR 358
           +HL+ LFR    V+ C+DGD AGR AAWRALE  L  L+ G   +FLFLPDGEDPD+ VR
Sbjct: 294 EHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDPDTLVR 353

Query: 359 KYGKADFEQQV-ANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFLQ 417
             G   F  ++  ++ PL+ Y F+ L +  + +  S EGK+ L  +A PLI+KIP   L+
Sbjct: 354 AEGTDAFRARIQQHSQPLADYFFQQLSD--EADPRSLEGKAHLATLAAPLIEKIPGSNLR 411

Query: 418 EILEKLLDERTGFDHQLRRKKA-------------------------------------- 439
            ++ + L E TG + +  +  A                                      
Sbjct: 412 TLMRQRLAEITGLNGEALQHMAAAPAPSPGNSTPEYDDSAYYETGAHYAETDYFEPPETP 471

Query: 440 --------------RKTENRPAPHKAIKRTPMR------DVIALLIQNPSYAELVPDLAS 479
                         +K+  RP       RTP          +  L+ +P  A+ V D   
Sbjct: 472 KQQRSGKKEWKKDWKKSGQRPDFKPRGPRTPATVEPPTLTTLRTLLHHPELAQKVED--- 528

Query: 480 VRHLMIPGLDTFSE----VLEKCRQYPHITTGQLLEHWRDSKNETLLSRLASWEIPLVED 535
           V H      DT+++    +L   ++ P + + QL+  W  +    LL  LA  E  +  D
Sbjct: 529 VSHFAAED-DTYAQLLVALLGALQKNPKLRSLQLIARWHGTDQGRLLRALAEKEWLISAD 587

Query: 536 NQEELFLDSLDKILAQCVEKQIENLQAKERSVGLSTEEKRELQDLI 581
           N E+ F D+++ + A+  E+++ENL  K R   LS EEK +L++L+
Sbjct: 588 NLEQQFFDTINSLAARQRERRLENLLRKARQGELSAEEKDQLRNLL 633