Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., DNA primase (EC 2.7.7.-) from Xanthomonas campestris pv. campestris strain 8004

 Score =  470 bits (1209), Expect = e-137
 Identities = 263/595 (44%), Positives = 371/595 (62%), Gaps = 29/595 (4%)

Query: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYHCFGC 64
           IP +FID+LLAR DIV+V+  RV LK++GK YSA CPFH+E++ SF+VS  KQFYHCFGC
Sbjct: 4   IPDAFIDELLARTDIVEVVGGRVPLKRQGKEYSARCPFHDERSASFTVSPTKQFYHCFGC 63

Query: 65  GAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQRE--ERTPSSPFAKNTPAVKSEDKRS 122
           GAHG AI F+M Y+R+EF +A++ELA   G+E+ RE  +RTP           + +D R 
Sbjct: 64  GAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQ----------QQDDSRE 113

Query: 123 LYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQ 182
           LY  + +  +F+++QL+   +  A +YL  RG+  E   +F IGY  D +  ++   G  
Sbjct: 114 LYSALEAATKFFQRQLE--GSDRARDYLDGRGVDAENRARFQIGYAPDGYSALKDTLGTD 171

Query: 183 RSSEDMLVTAGMLIENDNGRRYDRFRGRVMFPIRDRRGRVIGFGGRIT------EQGTPK 236
                +L  AG+  +ND G  YD+FR RVMFPI DRRGRVI FGGRI           PK
Sbjct: 172 ARRMSVLERAGLFSKNDRGHVYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPK 231

Query: 237 YLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTST 296
           YLNSPET +FHKG+ELYGL++V QA ++  +++VVEGYMDVV+L Q+GV  +VA+LGT+T
Sbjct: 232 YLNSPETALFHKGRELYGLWQVRQANQKIERLIVVEGYMDVVSLFQFGVTQAVATLGTAT 291

Query: 297 TGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSY 356
           T +H +LLFR    V  C+DGD AGR A WRALE+ L  +K G    FLFLPDGEDPD+ 
Sbjct: 292 TPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPDGEDPDTI 351

Query: 357 VRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFL 416
           VRK G   F+ ++  ATPLSQ+ F+ +     INL + +GK+ L   A P++ +IP+   
Sbjct: 352 VRKEGAQAFDARLKQATPLSQFFFDEM--ARDINLHTLDGKARLAERAKPMLAQIPEGAF 409

Query: 417 QEILEKLLDERTG----FDHQLRRKKARKTENRPAPHKAIKRTPMRDVIALLIQNPSYAE 472
            +++++ L   TG       Q    KAR      AP +  KR+ +R  IA+L+Q PS A 
Sbjct: 410 GDLMKQELARMTGVGASMSAQQSPPKARPPARMGAPTQ--KRSLVRASIAILLQQPSLAM 467

Query: 473 LVPDLASVRHLMIPGLDTFSEVLEKCRQYPHITTGQLLEHWRDSKNETLLSRLASWEIPL 532
            +        L +PG++   E+L   RQ P I+TG LLEH+ + +    L +LA+ E+P 
Sbjct: 468 SLEGDHDFSGLRLPGIELLMELLALVRQRPEISTGALLEHFAEREELVALQKLAAQELPG 527

Query: 533 VEDNQEELFLDSLDKILAQCVEKQIENLQAKERSVGLSTEEKRELQDLILKGLKA 587
            E +      D + ++  Q + +++E LQAK+R+ GL   +K E+++L LK L A
Sbjct: 528 DEHSWAIELHDVVAQLDKQLLRQRVEELQAKQRAQGLDNTDKYEMREL-LKALAA 581