Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 576 a.a., DNA primase (RefSeq) from Shewanella amazonensis SB2B

 Score =  564 bits (1454), Expect = e-165
 Identities = 304/592 (51%), Positives = 405/592 (68%), Gaps = 28/592 (4%)

Query: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYHCFGC 64
           IPR FI+DL+AR DIV++ID +V LKK GKNYSACCPFH+EK+PSF+VS++KQFYHCFGC
Sbjct: 3   IPRDFINDLIARTDIVELIDRKVPLKKAGKNYSACCPFHSEKSPSFTVSRDKQFYHCFGC 62

Query: 65  GAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDKRSLY 124
           GAHGNAIDFVMEY+R+ F +AIE+LA  +GLEV RE+ T         P       R LY
Sbjct: 63  GAHGNAIDFVMEYDRLNFVDAIEDLAGQLGLEVPREQGTG--------PRRDEGLARDLY 114

Query: 125 DLMGSIAQFYRQQLKVPANKHAI-EYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQR 183
            LM   A+ Y+ QL+  A+K  + EYL  RGLS E+V+ FGIG+  D WD +   +    
Sbjct: 115 QLMEEAARHYQTQLRQHADKQKVDEYLALRGLSKEVVEDFGIGFAPDGWDGLLGRYRTNP 174

Query: 184 SSEDMLVTAGMLIENDNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYLNSPET 243
            ++D L+T GMLIEND G+RYDRFR R+MFPIRDRRGRVIGFGGR+   GTPKYLNSPET
Sbjct: 175 DAQDKLLTGGMLIENDGGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSPET 234

Query: 244 PIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTGDHLQL 303
           PIFHKG+ELYGLYE+ Q +R+P ++++VEGYMDVVALAQ+G+DY+VASLGTSTT +  QL
Sbjct: 235 PIFHKGQELYGLYELKQKHRDPERVMIVEGYMDVVALAQFGIDYAVASLGTSTTAEQFQL 294

Query: 304 LFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVRKYGKA 363
           L R    VICCYDGD+AG +AAWRA+E AL  LK G+ + FLFLP GEDPDS VRK GK 
Sbjct: 295 LLRSAKEVICCYDGDKAGYEAAWRAMETALPLLKPGDKVTFLFLPQGEDPDSQVRKEGKE 354

Query: 364 DFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFLQEILEKL 423
            FE ++ NA PL+ YLF+ L + +    G+ +G  A +A+A  LI+KI D  L  +L + 
Sbjct: 355 AFEMRIDNALPLADYLFDTLSQKY----GTDKGNLAKQAIA--LIEKIKDTVLANLLLEN 408

Query: 424 LDERTGFD--HQLRRK---KARKTENRPAPHKAIK--RTPMRDVIALLIQNPSYAELVPD 476
           L  + G +    LR+K    +  T  +    K +K   TP+R  I+LL+Q+P     +P 
Sbjct: 409 LAHKLGMNSSEDLRKKLGLTSMSTGAKAMAKKGLKGRGTPLRLAISLLVQHPELGHKLPV 468

Query: 477 LASVRHLMIPGLDTFSEVLEKCRQYPHITTGQLLEHWRDSKNETLLSRLASWEIPLVEDN 536
             ++ H+ + G++   ++LE  R+   ++T QLLE +RDS++   L++LA WE  + EDN
Sbjct: 469 QPALSHIRMTGIELLIQLLELTREQV-LSTAQLLESYRDSEHWGPLTKLAQWEHQIAEDN 527

Query: 537 QEELFLDSLDKILAQCVEKQIENLQAKERSVGLSTEEKRELQDLI--LKGLK 586
             + F  +L  +  Q +E++ + L  K     L+ EEK +LQ LI  +KG+K
Sbjct: 528 VAQEFRKALVWLNNQYIEQRYQELSIKP---DLTREEKLQLQKLIVVMKGMK 576