Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., DNA primase (NCBI) from Rhodospirillum rubrum S1H

 Score =  320 bits (821), Expect = 8e-92
 Identities = 177/443 (39%), Positives = 258/443 (58%), Gaps = 18/443 (4%)

Query: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYHCFGC 64
           +P +F+D+L ARL +  V+  RVKL +KG+ +   CPFHNEK+PSF+V+ EK F+HCFGC
Sbjct: 3   LPNAFLDELRARLTLSSVVGRRVKLARKGREFLGLCPFHNEKSPSFTVNDEKGFFHCFGC 62

Query: 65  GAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDKRSLY 124
           GAHG+ I F M    + F EA+E L++  GLE+ RE               +S    S  
Sbjct: 63  GAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRETAEDRD---------RSRQAASHR 113

Query: 125 DLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRS 184
           ++M     FY++ L++P  + A+EYL+ RGL    + +F +G+ + +   ++    ++  
Sbjct: 114 EIMEMACAFYQKALRLPEGRGAMEYLRGRGLDDATLARFRLGF-SPQGGALKAALAREGV 172

Query: 185 SEDMLVTAGMLIENDNGR-RYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYLNSPET 243
            E  +V  G+++ +D+GR  +D FRGRVMFPI D  GRV+ FG RI  +G PKYLNSP+T
Sbjct: 173 DEQAMVDLGLILRSDDGRPAFDYFRGRVMFPIGDPAGRVVAFGARILGEGQPKYLNSPDT 232

Query: 244 PIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTGDHLQL 303
           P+FHKG  LY L    +A R+   I+V EGYMDV+ALA+ G+ ++VA LGT+ T   ++ 
Sbjct: 233 PLFHKGHSLYNLGPAREAARQSGAIIVAEGYMDVIALARAGLGWAVAPLGTALTEAQMEA 292

Query: 304 LFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVRKYGKA 363
           L+R     + C+DGD AGR AA RA+E AL  +  G  L+F  LP G DPD  +R+ G  
Sbjct: 293 LWRTIPEPVLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPDDLLREGGPV 352

Query: 364 DFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFLQEILEKL 423
              Q +  A P S+  +  L E     L + E ++AL A     + KI D  LQ    + 
Sbjct: 353 ALRQVLDVAVPFSEMAWRELSEGQA--LTTPEQRAALEAAIDAFVAKIADRSLQGHYRQA 410

Query: 424 LDER-----TGFDHQLRRKKARK 441
           L +R      G   + R ++ARK
Sbjct: 411 LRDRFWTVLRGDSARSRAERARK 433