Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., DNA primase (RefSeq) from Shewanella loihica PV-4

 Score =  561 bits (1446), Expect = e-164
 Identities = 298/587 (50%), Positives = 406/587 (69%), Gaps = 31/587 (5%)

Query: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYHCFGC 64
           IPR FI++L+AR DIVD+IDA+V LKK GKN+SACCPFH+EK+PSF+VS++KQFYHCFGC
Sbjct: 29  IPREFINELVARTDIVDLIDAKVPLKKAGKNHSACCPFHSEKSPSFTVSRDKQFYHCFGC 88

Query: 65  GAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDK---R 121
           GAHGNAIDFVMEY+R++F +AIEELA  +GLEV RE+ T            K  D+   R
Sbjct: 89  GAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTG-----------KRRDEGLSR 137

Query: 122 SLYDLMGSIAQFYRQQLKVPANKHAI-EYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFG 180
            LY LM   +++++ QLK   +K  + +YL +RGLS E+++ F IG+  D WD +   + 
Sbjct: 138 DLYQLMEEASRYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYR 197

Query: 181 QQRSSEDMLVTAGMLIENDNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYLNS 240
           Q + ++D L+TAGM+IEND+G+RYDRFR R+MFPIRDRRGRVIGFGGR+   GTPKYLNS
Sbjct: 198 QNQDAQDKLLTAGMVIENDSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNS 257

Query: 241 PETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTGDH 300
           PETPIFHKG ELYGLYE+ Q +R+P QIL+VEGYMDVVAL Q+GVDY+VASLGTSTT D 
Sbjct: 258 PETPIFHKGYELYGLYELKQRHRDPSQILIVEGYMDVVALTQFGVDYAVASLGTSTTADQ 317

Query: 301 LQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVRKY 360
            QLL R    VICCYDGD+AG +AAWRALE AL  LK G+ +KF+FLP GEDPDS VR+ 
Sbjct: 318 FQLLLRSAKEVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGEDPDSLVRQI 377

Query: 361 GKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFLQEIL 420
           GK  FEQ +A A  L ++LF+ L   +    G+ +G  A +A++  LI+K+ D  LQ +L
Sbjct: 378 GKPAFEQLIAEAKLLPEFLFDTLASRY----GTDKGTLAKQAMS--LIEKVQDTVLQSLL 431

Query: 421 EKLLDERTGFD--HQLRRKKA--RKTENRPAPHKAIK--RTPMRDVIALLIQNPSYAELV 474
            + L  + G +   +L+RK    R   N+P  +KA+K   TP+R  IALL+Q+P     +
Sbjct: 432 LENLAYKLGMNSAEELQRKLGFKRIDANKPLQNKALKGRGTPLRLAIALLVQHPHLGNNL 491

Query: 475 PDLASVRHLMIPGLDTFSEVLEKCRQYPHITTGQLLEHWRDSKNETLLSRLASWEIPLVE 534
           P   +++H+ + G+D  S +L++ R    + + QLLE +R       L +LA WE  + +
Sbjct: 492 PVQPALKHIKMAGIDLLSLLLDRTRA-EKVNSAQLLEQFRGDDQLDTLKKLAQWEHQVAD 550

Query: 535 DNQEELFLDSLDKILAQCVEKQIENLQAKERSVGLSTEEKRELQDLI 581
           +N ++ F  +L  +  Q +E++ + L  K+     + EE+ +L+ LI
Sbjct: 551 ENLQQEFKKALIWLNNQYIEQRYQELSLKQHH---TKEERMQLKKLI 594