Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., DNA primase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  560 bits (1444), Expect = e-164
 Identities = 302/591 (51%), Positives = 401/591 (67%), Gaps = 30/591 (5%)

Query: 5   IPRSFIDDLLARLDIVDVIDARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQFYHCFGC 64
           IPR FI++L+AR DIV++ID +V LKK GKNYSACCPFH+EK+PSF+VS++KQFYHCFGC
Sbjct: 3   IPRDFINELIARTDIVELIDRKVPLKKAGKNYSACCPFHSEKSPSFTVSRDKQFYHCFGC 62

Query: 65  GAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED--KRS 122
           GAHGNAIDFVMEY+R++F +AIE+LA  +GLEV RE+ T            + +D   R 
Sbjct: 63  GAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGK----------RQDDGLSRD 112

Query: 123 LYDLMGSIAQFYRQQLKVPANKH-AIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQ 181
           LY LM   ++F++ QL+   +K   I+YL  RGLS +IV+ FGIG+  D WD +   + Q
Sbjct: 113 LYQLMEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQ 172

Query: 182 QRSSEDMLVTAGMLIENDNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITEQGTPKYLNSP 241
            + ++D L+TAGMLI ND+G+RYDRFR R+MFPIRDRRGRVIGFGGR+   GTPKYLNSP
Sbjct: 173 NQDAQDKLLTAGMLISNDSGKRYDRFRDRLMFPIRDRRGRVIGFGGRVLGDGTPKYLNSP 232

Query: 242 ETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTSTTGDHL 301
           ETPIFHKG ELYGLYE+ Q +R+P ++L+VEGYMDVVALAQYGVDY+VASLGTSTT +  
Sbjct: 233 ETPIFHKGNELYGLYELKQRHRDPDKVLIVEGYMDVVALAQYGVDYAVASLGTSTTAEQF 292

Query: 302 QLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDSYVRKYG 361
           QLL R    VICCYDGDRAG +AAWRALE AL  LK G+ ++F+FLP  EDPDS VRK G
Sbjct: 293 QLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSEDPDSMVRKIG 352

Query: 362 KADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFLQEILE 421
           K  FEQ + +A  L ++LF+ L        G+ +G  A +A    LI+KI D  LQ +L 
Sbjct: 353 KDPFEQLMESAITLPEFLFDTL----ATKFGTDKGNLAKQAFG--LIEKIQDTVLQNLLL 406

Query: 422 KLLDERTGFD-HQLRRKKARKTENRPAPHKAI----KRTPMRDVIALLIQNPSYAELVPD 476
           + L  + G +     +KK   T  +P P  +     + TP+R  IALL+Q+P     +  
Sbjct: 407 ENLAHKLGMNSSDDMKKKLGFTVKQPKPTASTGLKGRGTPLRLAIALLVQHPELGVGLSP 466

Query: 477 LASVRHLMIPGLDTFSEVLEKCRQYPHITTGQLLEHWRDSKNETLLSRLASWEIPLVEDN 536
             ++ HL +PG+D    +L   R++  + + QLLE +RDS +   L +LA W+  + E+N
Sbjct: 467 QPALNHLQMPGIDLLPLLLALTREH-RLNSAQLLEQFRDSPHSGTLHKLAQWDHQVAEEN 525

Query: 537 QEELFLDSLDKILAQCVEKQIENLQAKERSVGLSTEEKRELQDLI--LKGL 585
           Q E F  +L  +  Q +E++ + L  K+     + EEK +LQ LI  +KGL
Sbjct: 526 QLEKFKQTLVWLNNQYIEQRYQELSLKQTH---TKEEKIQLQKLISVMKGL 573