Pairwise Alignments

Query, 587 a.a., DNA primase from Vibrio cholerae E7946 ATCC 55056

Subject, 650 a.a., DNA primase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  248 bits (634), Expect = 4e-70
 Identities = 154/423 (36%), Positives = 227/423 (53%), Gaps = 21/423 (4%)

Query: 5   IPRSFIDDLLARLDIVDVI------DARVKLKKKGKNYSACCPFHNEKTPSFSVSQEKQF 58
           +P  F+D+L +R+ +  V       D R   + KG  + A CPFH EKT SF V   K +
Sbjct: 3   LPPGFLDELRSRVSMAQVAGRKLIWDMRKSQQGKGDMW-APCPFHQEKTASFHVDDRKGY 61

Query: 59  YHCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSE 118
           Y+CFGC A G+AI FV E E + F EA+E LA+  G+ +    R P +       A K++
Sbjct: 62  YYCFGCHAKGDAISFVRETENVGFMEAVEILAAEAGMPMPA--RDPQA-------AAKAD 112

Query: 119 DKRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRN 178
            +  L ++     QF+R  LK  A   A  YL  RGLS E   ++ IG+  D W  +  +
Sbjct: 113 RRTQLSEVAEQAVQFFRLNLKTAAAAEARAYLVRRGLSEEAQARWEIGFAPDGWQHLWDH 172

Query: 179 FGQQRSSEDMLVTAGML--IENDNGRRYDRFRGRVMFPIRDRRGRVIGFGGRITE-QGTP 235
              +  +ED+++ AG+      + GR YD FR R+MFPIRD RGR I FGGR  + +   
Sbjct: 173 LRGKGVAEDLILDAGLAKPSRKEGGRPYDVFRNRIMFPIRDARGRAIAFGGRAMDPEDGA 232

Query: 236 KYLNSPETPIFHKGKELYGLYEVLQAYREPPQILVVEGYMDVVALAQYGVDYSVASLGTS 295
           KYLNSPET +F K + L+      +A  +   ++V EGYMDV+AL++ G   +VA LGT+
Sbjct: 233 KYLNSPETELFDKSRVLFNHARAREAAGKSSPLIVAEGYMDVIALSEAGFAGAVAPLGTA 292

Query: 296 TTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFLPDGEDPDS 355
            T   L+LL+R +   +   DGDRAG  A  R ++ AL  + +G  ++F  LP+ +DPD 
Sbjct: 293 VTEPQLELLWRISPEPVFALDGDRAGLQAGQRVVDLALPLITAGKSMRFCILPEKQDPDD 352

Query: 356 YVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPF 415
            +R  G       +  A P+ + L++   E       S E K+AL       + KI DP 
Sbjct: 353 VIRAGGAEAMATLLDQAKPMVELLWQR--ETAGKVFDSPERKAALGKALRQAVAKITDPT 410

Query: 416 LQE 418
           +++
Sbjct: 411 IKQ 413