Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Pseudomonas fluorescens FW300-N2E2

 Score =  793 bits (2047), Expect = 0.0
 Identities = 417/622 (67%), Positives = 490/622 (78%), Gaps = 16/622 (2%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           QS++K+L+L G+EQGYLTYAEVNDHLP +I D EQVEDII+MINDMGI V E APD D L
Sbjct: 8   QSRIKELILLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEVAPDKDAL 67

Query: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
            L+D  T  DE AAE AAAAL++VE++IGRTTDPVRMYMREMGTVELLTREGEI+IAKRI
Sbjct: 68  MLADADT--DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRI 125

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGS 185
           E+GI +V  AIA +PGT+ +IL ++ RV  E  RL+D++SG++DP+D           G 
Sbjct: 126 EEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDD-----------GI 174

Query: 186 ELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEV--GIDPELAREKFNELRGKFQNL 243
               A++    DA     D+D D+D D E+SD EEE   G DP +A ++F  +  + +  
Sbjct: 175 APPAAEVPPPIDAKAVKADDDTDDD-DAEASDDEEEAESGPDPIIAAQRFGAVADQMEIT 233

Query: 244 QLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAV 303
           + A+ + GR++ QA      + ++F   +L PKQF+ LVE +R+++DR+R QER +M+  
Sbjct: 234 RKALKKHGRNNKQAIAELLALAELFMPIKLVPKQFEGLVERVRSALDRLRQQERAIMQLC 293

Query: 304 VEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQET 363
           V  A+MP+  F+  F GNE +E W D +      Y   +   + +I R  QKL  +E ET
Sbjct: 294 VRDARMPRADFLRQFPGNEVDESWTDALAKGKSKYAEAIARLQPDIVRCQQKLSALEAET 353

Query: 364 SLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 423
            LS+  IKDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
Sbjct: 354 GLSIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 413

Query: 424 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 483
           LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML
Sbjct: 414 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQML 473

Query: 484 QEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELP 543
           QEMGREP PEEL ERM+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+T++ P
Sbjct: 474 QEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSP 533

Query: 544 LDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 603
           +D AT  SLK ATR+VL+GLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE
Sbjct: 534 IDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE 593

Query: 604 AKALRKLRHPSRSEVLRSFLDE 625
           AKALRKLRHP+RSE LRSFLDE
Sbjct: 594 AKALRKLRHPTRSEHLRSFLDE 615