Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N2E2

 Score =  199 bits (507), Expect = 1e-55
 Identities = 100/247 (40%), Positives = 159/247 (64%), Gaps = 3/247 (1%)

Query: 365 LSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 424
           LS E     +R    G+   R   K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL
Sbjct: 77  LSPEEEVHFARLSQSGDPAGR---KRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGL 133

Query: 425 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 484
           ++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q
Sbjct: 134 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQ 193

Query: 485 EMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 544
           ++  EP PEE+A  ++ P  +++++L + +   S++  +G D D  L D + D     P 
Sbjct: 194 KLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPC 253

Query: 545 DSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 604
           +      L  +    L+ LT ++ +V+  RFG+  +   TLE+VG +  +TRER+RQI+ 
Sbjct: 254 ELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQV 313

Query: 605 KALRKLR 611
           + L++LR
Sbjct: 314 EGLKRLR 320



 Score = 27.7 bits (60), Expect = 8e-04
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 50  DMGIKVVETAPDADDLALSDDTTITDEDAAEAAAAALSSVES-EIGRTTDPVRMYMREMG 108
           D  + ++ET    D ++  +  T     A    +A+L   +  +  R  D  ++Y+ E+G
Sbjct: 13  DDEVLLMETGIAMDSMSNDEGATPPSVRAKSKHSASLKQHKYIDYTRALDATQLYLNEIG 72

Query: 109 TVELLTREGEIDIAKRIEDG 128
              LL+ E E+  A+  + G
Sbjct: 73  FSPLLSPEEEVHFARLSQSG 92