Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  794 bits (2051), Expect = 0.0
 Identities = 416/621 (66%), Positives = 494/621 (79%), Gaps = 12/621 (1%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           QS+LK+L+ RG+EQGYLTYAEVNDHLP +I D EQVEDII+MINDMGI V E APDAD L
Sbjct: 8   QSRLKELIQRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEVAPDADAL 67

Query: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
            L++  T  DE AAE AAAAL++VE++IGRTTDPVRMYMREMGTVELLTREGEI+IAKRI
Sbjct: 68  LLAEADT--DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRI 125

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGS 185
           E+GI +V SAIA +PGT+  IL  ++RV  E  RL+D++SG++DP+D    AP      +
Sbjct: 126 EEGIREVMSAIAHFPGTVDSILADYERVTTEGGRLSDILSGYIDPDDDGAAAPQEVEPEA 185

Query: 186 ELSEADLADEDDAVVEDEDED-EDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNLQ 244
             + A  A +D    ++ED D E+E+GDG         G DPE+AR +F  +  + +   
Sbjct: 186 PQTAAKPAADDKDDEDEEDSDTEEEEGDG---------GPDPEVARLRFGAVAEQLEKAN 236

Query: 245 LAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVV 304
            A+ + GR S QA E  + +  +F   +L PKQ+D LVE +R +++++R QER +M+  V
Sbjct: 237 KALKKHGRASQQAVEELEALAILFMPIKLVPKQYDALVERVRNALNQIRAQERAIMQLCV 296

Query: 305 EVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETS 364
             A+MP+  F+  F  NE+N +W +++ +    Y   +  ++E+I+R  Q L  +EQE S
Sbjct: 297 RDARMPRADFLRQFPSNETNLDWAEQLASGKGKYAEAIGNRKEDIQRCQQMLIELEQECS 356

Query: 365 LSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 424
           L++  IKDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
Sbjct: 357 LAIADIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 416

Query: 425 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 484
           MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ
Sbjct: 417 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 476

Query: 485 EMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 544
           EMGREP PEEL ERM+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+ ++ P+
Sbjct: 477 EMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPI 536

Query: 545 DSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 604
           D AT  SLK ATR+VL+GLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA
Sbjct: 537 DVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 596

Query: 605 KALRKLRHPSRSEVLRSFLDE 625
           KALRKLRHP+RSE LRSFLDE
Sbjct: 597 KALRKLRHPTRSEHLRSFLDE 617