Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Pseudomonas stutzeri RCH2

 Score =  201 bits (512), Expect = 3e-56
 Identities = 95/224 (42%), Positives = 154/224 (68%)

Query: 388 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 447
           +K M+E+NLRLV+ IA++Y NRGL  LDL++EGN+GL++AV+KF+  RG++FSTYATWWI
Sbjct: 93  RKRMIESNLRLVVKIARRYVNRGLSLLDLVEEGNLGLIRAVEKFDPERGFRFSTYATWWI 152

Query: 448 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIR 507
           RQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q++  EP PEE+A  ++ P  +++
Sbjct: 153 RQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVK 212

Query: 508 KVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPRE 567
           ++L + +   S++  +G D D  L D + D     P +      L  +    L+ L+ ++
Sbjct: 213 RMLGLNERVTSVDVSLGPDTDKTLLDTLTDDRPTDPCELLLDDDLSNSIDQWLSDLSEKQ 272

Query: 568 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
            +V+  RFG+  +   TLEEVG++  +TRER+RQI+ +ALR+LR
Sbjct: 273 REVVIRRFGLRGHEASTLEEVGQEIGLTRERVRQIQVEALRRLR 316



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 61  DADDLALSDDTTI---TDEDAAEAAAAALSSVES-------EIGRTTDPVRMYMREMGTV 110
           D DD  L  +T I      +   AA A      S       +  R  D  ++Y+ E+G  
Sbjct: 11  DVDDAVLLMETPIHLDQKSNVTRAATAGRPKAASSKQHKFIDYNRALDATQLYLNEIGFS 70

Query: 111 ELLTREGEIDIAKRIEDG 128
            LLT E E+  A+  + G
Sbjct: 71  PLLTPEEEVHFARLAQKG 88