Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RNA polymerase, sigma 70 subunit, RpoD from Pseudomonas syringae pv. syringae B728a

 Score =  790 bits (2040), Expect = 0.0
 Identities = 410/620 (66%), Positives = 484/620 (78%), Gaps = 11/620 (1%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           QS++K+L+  G+EQ YLTYAEVNDHLP +I D EQVEDII+MINDMGI V E+APDAD L
Sbjct: 8   QSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHESAPDADAL 67

Query: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
            L+D  T  DE AAE AAAAL++VE++IGRTTDPVRMYMREMGTVELLTREGEI+IAKRI
Sbjct: 68  MLADADT--DEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRI 125

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGS 185
           E+GI +V  AIA +PGT+ +IL ++ RV +E  RL+D++SG++DP+D          I  
Sbjct: 126 EEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDD---------GIAP 176

Query: 186 ELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNLQL 245
                   D      E  D+DE+E  D    + E E G DP +A+++F  +  + +  + 
Sbjct: 177 PAEVPPPVDPKAVKAEGADDDEEESADASDEEDEVESGPDPVIAQQRFGAVSDQMEITRK 236

Query: 246 AVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVE 305
           A+ +FGRD   A      + ++F   +L PKQF+ LVE +R +++R+R QER +M+  V 
Sbjct: 237 ALKKFGRDDKHAIAEMVALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVR 296

Query: 306 VAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETSL 365
            A+MP+  F+  F GNE +E W D +      Y   +   + +I+R  QKL  +E+ET L
Sbjct: 297 DARMPRADFLRQFPGNEVDESWTDALAKGKSKYAEAIGRLQPDIQRCQQKLSALEEETGL 356

Query: 366 SVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 425
            +  IKDI+RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
Sbjct: 357 KIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 416

Query: 426 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 485
           KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
Sbjct: 417 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 476

Query: 486 MGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 545
           MGREP PEEL ERM+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED+T++ P+D
Sbjct: 477 MGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPID 536

Query: 546 SATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 605
            AT  SLK ATR+VL+GLT REAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
Sbjct: 537 VATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 596

Query: 606 ALRKLRHPSRSEVLRSFLDE 625
           ALRKLRHP+RSE LRSFLDE
Sbjct: 597 ALRKLRHPTRSEHLRSFLDE 616