Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., RNA polymerase, sigma 38 subunit, RpoS from Pseudomonas syringae pv. syringae B728a

 Score =  199 bits (507), Expect = 1e-55
 Identities = 100/247 (40%), Positives = 159/247 (64%), Gaps = 3/247 (1%)

Query: 365 LSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 424
           LS E     +R    G+   R   K M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL
Sbjct: 77  LSPEEEVHFARLSQSGDPAGR---KRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGL 133

Query: 425 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 484
           ++AV+KF+  RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++ Q
Sbjct: 134 IRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARELTQ 193

Query: 485 EMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 544
           ++  EP PEE+A  ++ P  +++++L + +   S++  +G D D  L D + D     P 
Sbjct: 194 KLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLLDTLTDDRPTDPC 253

Query: 545 DSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 604
           +      L  +    L+ LT ++ +V+  RFG+  +   TLE+VG +  +TRER+RQI+ 
Sbjct: 254 ELLQDDDLSQSIDQWLSELTEKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQV 313

Query: 605 KALRKLR 611
           + L++LR
Sbjct: 314 EGLKRLR 320



 Score = 25.8 bits (55), Expect = 0.003
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 95  RTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128
           R  D  ++Y+ E+G   LL+ E E+  A+  + G
Sbjct: 59  RALDATQLYLNEIGFSPLLSPEEEVHFARLSQSG 92