Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., RNA polymerase sigma factor SigC from Synechocystis sp000284455 PCC 6803

 Score =  238 bits (607), Expect = 4e-67
 Identities = 119/260 (45%), Positives = 178/260 (68%), Gaps = 8/260 (3%)

Query: 365 LSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 424
           L+VE +++I       E +   AK  M++ANLRLV+S+AKKY NRGL+ LDLIQEG +GL
Sbjct: 150 LTVEELENI-------EKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 202

Query: 425 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 484
            +AV+KF+  +GY+FSTY+ WWIRQ ITR+IA Q+R IR+PVH+ E +NK+ R  R++ Q
Sbjct: 203 ERAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQ 262

Query: 485 EMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL 544
           E G  P  +E+AE + M  +++R+VL      +S+E  +G D+D+ L D +E T  + P 
Sbjct: 263 EKGHTPKIDEVAEELGMTPEQVREVLTQVPRSVSLELKVGQDKDTELMDLLE-TDTQSPE 321

Query: 545 DSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 604
           D     +L+   +++L  LTPRE +V+ +RFG      H+L E+G+  +++RER+RQIEA
Sbjct: 322 DELMREALQNDMQEILLDLTPREQEVIALRFGFQDGVAHSLSEIGRILNLSRERVRQIEA 381

Query: 605 KALRKLRHPSRSEVLRSFLD 624
           KAL+KLRHP R + +R + +
Sbjct: 382 KALQKLRHPRRRDRIRDYYE 401



 Score = 35.0 bits (79), Expect = 6e-06
 Identities = 16/50 (32%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 96  TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN--QVQSAIAEYPGTI 143
           +TD VR+Y++++G + LL R+ E+ IA++++  +   ++Q+  AE    I
Sbjct: 47  STDLVRLYLQDIGRIPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAI 96