Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., group2 RNA polymerase sigma factor SigB from Synechococcus elongatus PCC 7942

 Score =  231 bits (590), Expect = 3e-65
 Identities = 116/289 (40%), Positives = 195/289 (67%), Gaps = 22/289 (7%)

Query: 344 EQEEEIRRSIQKLQMI----------------EQETSLSVE-RIKDISRRMSIGEAKARR 386
           E+E    R +Q+L M+                ++E + +V+  ++D+ R++  G+    R
Sbjct: 29  EEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ----R 84

Query: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
           AK++M+EANLRLV+SIAKKY  R ++FLDLIQEG +GL + V+KF+  +GYKFSTYA WW
Sbjct: 85  AKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYWW 144

Query: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKI 506
           IRQAITR+IA Q+RTIR+P+H+ E +NKL +  R++ Q++GR     ELAE +++P +++
Sbjct: 145 IRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPLEQV 204

Query: 507 RKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPR 566
           R+ +++ ++P+S++  +GD +D+ L + +ED     P D     SL+   R+++A LTP+
Sbjct: 205 REYIQMNRQPVSLDVKVGDSQDTELQELLEDEQ-SSPSDYVEQESLRRDLRNLMAELTPQ 263

Query: 567 EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 615
           +  V+ +R+G+D     +L +VG++ +++RER+R++E +A+  LR  SR
Sbjct: 264 QQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHLRRRSR 312



 Score = 28.9 bits (63), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 98  DPVRMYMREMGTVELLTREGEIDIAKRIE 126
           D VR Y++E+G V LLT E E+   ++++
Sbjct: 11  DLVRAYLQEIGRVRLLTAEEELCFGRQVQ 39