Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., principal RNA polymerase sigma factor SigA from Synechococcus elongatus PCC 7942

 Score =  230 bits (587), Expect = 6e-65
 Identities = 116/270 (42%), Positives = 185/270 (68%), Gaps = 5/270 (1%)

Query: 344 EQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIA 403
           +QE E+ + +Q +  + +ETS      +  +  + +G+    RAK+ M++ANLRLV+S+A
Sbjct: 36  DQEIELGQKVQVMMNLLEETSSDRTFTEAETAAIQLGQ----RAKERMIKANLRLVVSVA 91

Query: 404 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 463
           KKY  +GL+FLDLIQEG +GL +AV+KF+  +GYKFSTYA WWIRQ++TR+IA Q+RTIR
Sbjct: 92  KKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWWIRQSMTRAIACQSRTIR 151

Query: 464 IPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPI 523
           +PVH+ E ++++ +++R++  E+GR P  +E+AE +Q+P + +  +L+ +++  S++ P+
Sbjct: 152 LPVHLTERLSQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDLETILRQSRQCTSLDAPV 211

Query: 524 -GDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTD 582
            G+D  S LG+ I D     P+D       +      L  LTP+E +VL +RFG+     
Sbjct: 212 SGEDGKSFLGELIADPNGNEPMDIMENAMQREQLDAWLEHLTPQERQVLYLRFGLGDGER 271

Query: 583 HTLEEVGKQFDVTRERIRQIEAKALRKLRH 612
           HTL E+G+  +V+RER+RQ+E KALRKLR+
Sbjct: 272 HTLAEIGRMMEVSRERVRQVEVKALRKLRN 301



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 34/57 (59%)

Query: 82  AAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSAIAE 138
           A+A+  +V +   RT D V  Y+  +G + LLT + EI++ ++++  +N ++   ++
Sbjct: 2   ASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEETSSD 58