Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., RNA polymerase sigma factor RpoD from Synechococcus elongatus PCC 7942

 Score =  289 bits (740), Expect = 1e-82
 Identities = 142/241 (58%), Positives = 190/241 (78%), Gaps = 1/241 (0%)

Query: 383 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 442
           + RRAK +MV++NLRLV+SIAKKY NRGL F DLIQEG++GL++A +KF++ +GYKFSTY
Sbjct: 159 RGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 218

Query: 443 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMP 502
           ATWWIRQAITR+IADQ+RTIR+PVH+ ETI+++ + ++ + QEMGR+P  EE+A RM+M 
Sbjct: 219 ATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMT 278

Query: 503 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAG 562
            +K+R + K A+ PIS+ETPIG +EDS LGDFIE    E P D      L+     VL+ 
Sbjct: 279 IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIE-ADGETPEDEVAKNLLREDLEGVLST 337

Query: 563 LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 622
           L+PRE  VLR+R+G+D     TLEE+G+ F+VTRERIRQIEAKALRKLRHP+R+ +L+ +
Sbjct: 338 LSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEY 397

Query: 623 L 623
           +
Sbjct: 398 I 398



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 59  APDADDLALSDDTTI-TDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREG 117
           AP AD  A+ D+ ++  DEDAA  A A +    +E     D +R+Y++E+G + LL  + 
Sbjct: 54  APTADVDAIDDEDSVGEDEDAAAKAKAKVRKTYTE-----DSIRLYLQEIGRIRLLRADE 108

Query: 118 EIDIAKRIED--GINQVQSAIAEYPGTIP 144
           EI++A++I D   + +++  + E    +P
Sbjct: 109 EIELARQIADLLALERIRDELLEQLDRLP 137