Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like from Synechococcus elongatus PCC 7942

 Score =  211 bits (536), Expect = 5e-59
 Identities = 113/269 (42%), Positives = 175/269 (65%), Gaps = 7/269 (2%)

Query: 344 EQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIA 403
           E+E E+ R +Q +  + +            S   ++ +A  +RAK +M++ANLRLV+S+A
Sbjct: 37  EEEVELSRKVQLMMALLENPDAESN-----SENQAVLQA-GQRAKTKMLKANLRLVVSVA 90

Query: 404 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR 463
           KKY N+GL+ LDLIQEG++GL +AV+KF+   GYKFSTYA WWIRQ++TR+I + ARTIR
Sbjct: 91  KKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIR 150

Query: 464 IPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPI 523
           +P+H+ E I+++ +++R++  ++ R P   E+AE +++P   +  +L  +    S++   
Sbjct: 151 LPIHVSEKISRIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQA 210

Query: 524 -GDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTD 582
            GDD  S LGD I D     P+D+             LA LT RE +VL++RFG+     
Sbjct: 211 RGDDGRSFLGDLIPDPKSLEPMDAMDRHIQHEQISTWLAHLTEREQQVLQLRFGLHDGEQ 270

Query: 583 HTLEEVGKQFDVTRERIRQIEAKALRKLR 611
           HTL E+G++ +V+RERIRQ+EA+AL+KLR
Sbjct: 271 HTLAEIGRRLNVSRERIRQVEARALQKLR 299



 Score = 31.2 bits (69), Expect = 7e-05
 Identities = 15/64 (23%), Positives = 36/64 (56%)

Query: 96  TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQA 155
           T+D V  Y+  +G + LLT E E++++++++  +  +++  AE       +L+   R + 
Sbjct: 17  TSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKT 76

Query: 156 EELR 159
           + L+
Sbjct: 77  KMLK 80