Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 288 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  103 bits (256), Expect = 1e-26
 Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 15/239 (6%)

Query: 385 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 444
           + A+ ++  +++RLVIS+A K+ + GL   DL+QEG+IGL++A  +FE  R  +FSTYAT
Sbjct: 38  QEARNKIAMSHMRLVISMAAKFRSFGLPMGDLVQEGHIGLLEAAARFEPSREVRFSTYAT 97

Query: 445 WWIRQAITRSIADQARTIRIPVHMIE--TINKLNRISRQMLQ---EMGREPLPEELAERM 499
           WWIR ++   +      +R      +      L R+  ++ Q   ++  + + EE+A  +
Sbjct: 98  WWIRASMQDYVLRNWSIVRGGTSSAQKALFFNLRRLRARLAQGDRQLTSQAMHEEIAAAL 157

Query: 500 QMPEDKIRKV-LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRD 558
            +    ++ +  +++    S++ PIG   D   G  ++    E PL     + L    R 
Sbjct: 158 GVSLADVQTMDARLSGNDASLQAPIGSG-DPDAGARLDFLASEAPLPDEQVSDLIDGERA 216

Query: 559 ------VLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
                  L  L+ RE K++R R   +     TLEE+G    +++ER+RQIE +AL KLR
Sbjct: 217 RRWLQVALGELSEREMKIIRARRLTEDGA--TLEELGVALGISKERVRQIETRALEKLR 273