Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  538 bits (1387), Expect = e-157
 Identities = 324/663 (48%), Positives = 418/663 (63%), Gaps = 57/663 (8%)

Query: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALS 68
           +K+++   K++GY+T  E+N  LP+E V SEQ+ED + M++DMGI V+E   +A++ A S
Sbjct: 31  VKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMSMLSDMGINVIEDE-EAEEAAAS 89

Query: 69  DDTTITDEDAAEAA--------AAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID 120
           DD    DE  +E          A A S  +    RT DPVRMY+REMG+VELL+REGEI 
Sbjct: 90  DDDDGADEGESEGGELAPASGTALAASKKKEPTDRTDDPVRMYLREMGSVELLSREGEIA 149

Query: 121 IAKRIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMET----- 175
           IAKRIE G   + + + E P T   ++   D +   +  L ++I       D+ET     
Sbjct: 150 IAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGQTLLREII-------DLETTYSGP 202

Query: 176 EAPTATHIGS-ELSEAD--LADEDDAVVEDEDEDEDED-----GDGESSDSEEEVGIDPE 227
           EA  A    S E  EAD   A+E + V        D+D     G+G++ + EEE   +  
Sbjct: 203 EAKAAPQFQSPEKIEADRKAAEEKEKVRRTRTAANDDDITNVGGEGQAPEEEEEDDDESN 262

Query: 228 LA-------------------REKFNELRGKFQNLQLAVNEFGRDS------HQASEASD 262
           L+                    E + +LR K Q+ Q+        +       +  E  D
Sbjct: 263 LSLAAMEAELRPQVMETLDVIAETYKKLR-KLQDQQVEARLAATGTLSPAQERRYKELKD 321

Query: 263 LVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNE 322
            ++   +   L   + D LVE L     R+   E  +++ + E   + +++F+  ++G E
Sbjct: 322 ELIKAVKSLSLNQNRIDALVEQLYDISKRLTQNEGRLLR-LAESYGVKREAFLEQYSGAE 380

Query: 323 SNEEWLDKVL-ASDKPYVAKVREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGE 381
            +  W+  +   + K +    R + + IR   Q++Q +  ET +S+   + I   +  GE
Sbjct: 381 LDPNWMKSISNLAGKGWKEFARAENQTIRDIRQEIQNLATETGISIAEFRRIVSMVQKGE 440

Query: 382 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 441
            +AR AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST
Sbjct: 441 REARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 500

Query: 442 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQM 501
           YATWWIRQAITRSIADQARTIRIPVHMIETINK+ R SRQML E+GREP PEELAE++ M
Sbjct: 501 YATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAM 560

Query: 502 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLA 561
           P +K+RKVLKIAKEPIS+ETP+GD+EDSHLGDFIED    LP+D+A   +L+  T  VLA
Sbjct: 561 PLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLA 620

Query: 562 GLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRS 621
            LTPRE +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRS
Sbjct: 621 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRS 680

Query: 622 FLD 624
           FLD
Sbjct: 681 FLD 683