Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., RNA polymerase factor sigma-32 from Sinorhizobium meliloti 1021

 Score =  102 bits (254), Expect = 2e-26
 Identities = 79/278 (28%), Positives = 137/278 (49%), Gaps = 22/278 (7%)

Query: 353 IQKLQMIE-QETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGL 411
           I+K  M+E QE  +  +R +         E   R+A  ++V ++LRLV  IA  Y   GL
Sbjct: 23  IRKFPMLEPQEEYMLAKRYQ---------EHDDRKAAHKLVTSHLRLVAKIAMGYRGYGL 73

Query: 412 QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI--PVHMI 469
              ++I EGN+GLM+AV KFE  RG++ +TYA WWI+ AI   I      +++    +  
Sbjct: 74  PIGEVISEGNVGLMQAVKKFEPDRGFRLATYAMWWIKAAIQEYILRSWSLVKMGTTANQK 133

Query: 470 ETINKLNRISR--QMLQEMGREP-LPEELAERMQMPEDKIRKVLKIAKEPISMETPI--G 524
                L R+    Q L E   +P   +E+A  +++ E+++  + +      S+  PI   
Sbjct: 134 RLFFNLRRLKGRIQALDEGDLKPEQVKEIATTLKVSEEEVVSMNRRLSGDASLNAPIKAS 193

Query: 525 DDEDSHLGDFI---EDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNT 581
           + +     D++    D   ++ ++     S +A   + +  L  RE ++   R   +   
Sbjct: 194 EGDSGQWQDWLVDDHDNQEQILIEQDELESRRALLANAMKVLNDRERRIFEARRLTE--E 251

Query: 582 DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 619
             TLE++  +FD++RER+RQIE +A  K++   R   L
Sbjct: 252 PITLEDLSTEFDISRERVRQIEVRAFEKVQEAVRKAAL 289