Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score =  545 bits (1403), Expect = e-159
 Identities = 337/673 (50%), Positives = 422/673 (62%), Gaps = 65/673 (9%)

Query: 9   LKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALS 68
           +K+LV RGK++GY+TY E+N+ LP + V SEQ+ED + M++DMGI VVE   + +  A  
Sbjct: 31  VKKLVNRGKDRGYITYDELNNALPPDDVSSEQIEDTMAMLSDMGINVVEDEEEGEASAAP 90

Query: 69  DDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDG 128
                 +E   E AA    S E +IGRT DPVRMY+REMG+VELL+REGEI IAKRIE G
Sbjct: 91  PAEAGEEEPGREVAATGNVS-EDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAG 149

Query: 129 INQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGSELS 188
              +   I E P TI  +L+  D +    + L D+I   +D        P     G E S
Sbjct: 150 REMMIGGICESPLTIRALLQWHDALVDGRMLLRDIID--LDATYGSGAGPDVVAEGLEDS 207

Query: 189 EADL--------------ADEDDAVV------EDEDEDEDED-------GDGESSDSEEE 221
              L              ADE +  V      + EDEDE +D       GD E++ S E+
Sbjct: 208 VVPLSPLALSPARALPKEADEAEEAVTPGRDDDSEDEDEGDDAKPADGAGDEEAAPSGED 267

Query: 222 VG-----------IDPEL---AREKFNELRG------KFQNLQLAVNEFGRDSHQASEAS 261
            G           ++ EL     E F  +        K Q+ ++A  + G +   A E  
Sbjct: 268 EGDGSENNVSLAAMEQELMPRVLETFEHIATTYGKLKKAQDQRIAALQKGEEPGAALERK 327

Query: 262 ------DLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFI 315
                 +LV  +  +  L   + + LVE L      + TQE  +++ + E AK+ +  F+
Sbjct: 328 YDKLKLELV-GLMEDVHLNNARIEQLVEQLNALNKGLITQEGKLLR-LAERAKIRRDEFL 385

Query: 316 ALFTGNESNEEWLDKVLASD----KPYVAKVREQEEEIRRSIQKLQMIEQETSLSVERIK 371
             + G E +  W + V A      + +  +  ++ ++IR SI +   I + + L +   +
Sbjct: 386 DHYFGREMDPSWREDVAALPGKGWRDFTTRFADEIKDIRGSIAE---IAERSLLPIPEFR 442

Query: 372 DISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 431
            I   +  GE +A RAKKEM+EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
Sbjct: 443 RIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF 502

Query: 432 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPL 491
           EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL R SRQML E+GREP 
Sbjct: 503 EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPT 562

Query: 492 PEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATS 551
           PEELAE++QMP +K+RKVLKIAKEPIS+ETPIGD+EDSHLGDFIED     PLD+A  ++
Sbjct: 563 PEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVQPLDAAINSN 622

Query: 552 LKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
           L+     VLA LTPRE +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+
Sbjct: 623 LRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 682

Query: 612 HPSRSEVLRSFLD 624
           HPSRS  LRSFLD
Sbjct: 683 HPSRSRKLRSFLD 695