Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  100 bits (249), Expect = 9e-26
 Identities = 78/265 (29%), Positives = 132/265 (49%), Gaps = 13/265 (4%)

Query: 356 LQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD 415
           LQ I +   L+ E    +++R+   ++    A   +V ++LRLV  IA  Y   GL   +
Sbjct: 20  LQNIRKFPMLAPEEEYTLAQRLR--DSGDSEAAHRLVTSHLRLVAKIAMGYRGYGLPMGE 77

Query: 416 LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 475
           +I EGN+GLM+AV +F+  RG++ +TYA WWIR AI   I      +++     +     
Sbjct: 78  VISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFF 137

Query: 476 N-RISRQMLQEMGREPL-PE---ELAERMQMPE-DKIRKVLKIAKEPISMETPIGDDEDS 529
           N R  +  LQ M    + P+   ++A ++ +PE D I    +++    S+  P+  D D 
Sbjct: 138 NLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRLSSPDHSLNAPVRMDGDG 197

Query: 530 HLGDFIEDTTLELPLDSATATSL---KAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLE 586
              D++ D + +     A +  +   +A     L  L  RE  +L  R   D     TLE
Sbjct: 198 EWQDWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERHILTQRRLRD--DPVTLE 255

Query: 587 EVGKQFDVTRERIRQIEAKALRKLR 611
           ++ + + ++RER+RQIE +A  KL+
Sbjct: 256 DLSQHYGISRERVRQIEVRAFEKLQ 280