Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  106 bits (264), Expect = 2e-27
 Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 15/238 (6%)

Query: 385 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 444
           R A   +V ++LRLV  IA  Y + GL   DL+ EGN+GLMKAV KFE  RG++ +TYA 
Sbjct: 48  RDAAHRLVTSHLRLVAKIAMGYRHYGLPVSDLVAEGNMGLMKAVKKFEADRGFRLATYAM 107

Query: 445 WWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG----REPLPEE---LAE 497
           WWI+ +I   I +    ++  V  +    KL    R++  ++G     +  PE+   +A 
Sbjct: 108 WWIKASINEYILNSWSLVK--VGTVAAQKKLFFNLRRLKAKLGVYEEGDLSPEDVKTIAT 165

Query: 498 RMQMPE-DKIRKVLKIAKEPISMETPIGDDEDSHLGDFI---EDTTLELPLDSATATSLK 553
           ++++ E D +    ++A    S+  P+G+D+     D +    D   E+       +   
Sbjct: 166 QLKVTEADVVMMNRRLAGPDASLNVPVGEDQSMDRMDLLMDEGDNQEEVYAAHEEQSLGN 225

Query: 554 AATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
              +D L+ LT RE  ++  R     +   TLEE+G ++ V+RER+RQIE +A  KL+
Sbjct: 226 RLLKDALSTLTERERHIITAR--RLRSEPVTLEELGGEYGVSRERVRQIENRAFEKLQ 281