Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 189 a.a., sigma-70 family RNA polymerase sigma factor from Rhodanobacter denitrificans MT42

 Score =  150 bits (379), Expect = 4e-41
 Identities = 84/191 (43%), Positives = 118/191 (61%), Gaps = 8/191 (4%)

Query: 434 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPE 493
           R G+K STYATWWIRQ+ITR++AD+   IRIPVHM+E +N++  + R + +E+GR P  E
Sbjct: 4   REGWKLSTYATWWIRQSITRALADKGGEIRIPVHMMEKLNQVFGVQRTLERELGRAPSTE 63

Query: 494 ELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLK 553
           E A  +      + + +++ +  + + T   + E    GD          +D A   +  
Sbjct: 64  ETAAALNTDAAFVTRTMRMRRTIVDIATLDPESEWVTGGDSA--------IDHACQENSN 115

Query: 554 AATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP 613
           A     L+ L  REA+V+R+RFGI M+ + TLEEVGK+F VTRERIRQIE KAL +LRHP
Sbjct: 116 AQIDMALSSLDKREAEVVRLRFGIAMDGELTLEEVGKRFGVTRERIRQIEKKALMRLRHP 175

Query: 614 SRSEVLRSFLD 624
           SR+  L   LD
Sbjct: 176 SRAAGLADLLD 186