Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., RNA polymerase sigma factor RpoH from Rhodopseudomonas palustris CGA009

 Score = 98.6 bits (244), Expect = 3e-25
 Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 11/245 (4%)

Query: 385 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 444
           R A  ++V ++LRLV  IA  Y   GL   +++ EGN+GLM+AV +FE  +G++ +TYA 
Sbjct: 47  RDAAHQLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFRLATYAM 106

Query: 445 WWIRQAITRSIADQARTIRIPVHMIETINKLN-RISRQMLQEMGREPL-PEE---LAERM 499
           WWI+ +I   I      +++     +     N R ++  +  +    L P++   +A R+
Sbjct: 107 WWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALDEGDLHPDQVKLIATRL 166

Query: 500 QMPEDKIRKVLKIAKEPISMETPIGDD-EDSHLGDFIEDTTLELPLDSATATSL---KAA 555
            + E  +  + +      S+  PI DD E     D++ D +       A    L   +AA
Sbjct: 167 GVTEQDVVDMNRRLGGDASLNAPIRDDGEPGEWQDWLVDQSPSQEAVMAEHEELDQRRAA 226

Query: 556 TRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 615
               +  L PRE ++   R   D     TLE++  +F V+RER+RQIE +A  K++   +
Sbjct: 227 LNGAIQVLNPRERRIFEARRLAD--EPMTLEDLASEFGVSRERVRQIEVRAFEKVQSAVK 284

Query: 616 SEVLR 620
             + R
Sbjct: 285 GTIAR 289