Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  551 bits (1421), Expect = e-161
 Identities = 313/647 (48%), Positives = 420/647 (64%), Gaps = 35/647 (5%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           Q+Q+K+++   +E+GY+TY ++N  LP + V SEQ+ED++ M+++MGI ++E     ++ 
Sbjct: 24  QTQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQIEDVMSMLSEMGINIIEDEEAEEEE 83

Query: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
                  +T E   E A A  ++   ++ RT DPVRMY+REMG+VELL+REGEI IAKRI
Sbjct: 84  QKGSTELVTTESNREVAVAGAAA--EKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRI 141

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLIS------------GFVDPNDM 173
           E G N + + + E P T   I    D + +E++ L D+I             G V    +
Sbjct: 142 EAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDVIDLEATFGNQLDEDGEVSEPVV 201

Query: 174 ETEAPTATHIGSELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKF 233
           +T A  A    ++ +  +L  + + + +D+D+DED+  +   +  E  +        E+ 
Sbjct: 202 DTSAVAANKPAAKETGPELDADGNPIAQDDDDDEDDQANMSLAAMEAALKDKVLTTLEQI 261

Query: 234 NELRGKFQNLQ-----LAVNEFG----RDSHQASEASDLVLDIFREFRLTPKQFDHLVET 284
           +    +   +Q       +NE G    RD          ++ +  E  L   + + L++ 
Sbjct: 262 SSDYAQLSEMQDSRISATLNEDGSFSARDEQVYQSLRAEIVLLVNELHLHNNRIEALIDQ 321

Query: 285 LRTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKP------Y 338
           L     RV + +  ++K + + A++ ++ F+  + G E +  WL  +   DKP      +
Sbjct: 322 LYGINRRVMSIDSSMVK-LADQARINRREFVEAYRGRELDPNWLSDM--GDKPGRGWQMF 378

Query: 339 VAKVREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRL 398
           V +  ++ EE+R  + +   + Q   L +   + I +++  GE +AR+AKKEMVEANLRL
Sbjct: 379 VERSTDKIEELRADMAQ---VGQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRL 435

Query: 399 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 458
           VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
Sbjct: 436 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 495

Query: 459 ARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPIS 518
           ARTIRIPVHMIETINKL R  RQML E+GREP PEELAE++QMP +K+RKV+KIAKEPIS
Sbjct: 496 ARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPIS 555

Query: 519 METPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGID 578
           +ETPIGD+EDS LGDFIED    LPLDSA   +LK  T  VLA LTPRE +VLRMRFGI 
Sbjct: 556 LETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIG 615

Query: 579 MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE 625
           MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  LRSFLD+
Sbjct: 616 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ 662