Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., RNA polymerase sigma factor RpoS from Dechlorosoma suillum PS

 Score =  176 bits (447), Expect = 1e-48
 Identities = 98/243 (40%), Positives = 149/243 (61%), Gaps = 8/243 (3%)

Query: 374 SRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 433
           SRR   GE  AR+   +M+E NLRLV++IAK Y NRG+  LDL++EGN+GL+ A++KF+ 
Sbjct: 75  SRRAKAGEFAARQ---KMIEHNLRLVVNIAKHYLNRGIPLLDLVEEGNLGLIHALEKFDP 131

Query: 434 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMG----RE 489
            RG++FSTYATWWIRQ+I R+I +Q+RTIR+PVH+++ IN + R  R +    G    RE
Sbjct: 132 ERGFRFSTYATWWIRQSIERAIMNQSRTIRLPVHVVKEINVVLRAMRHLDGARGLTPSRE 191

Query: 490 PLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL-PLDSAT 548
              EE+A  +  P D IR +L + +   S++TP+  D +  +GD + D +    P+    
Sbjct: 192 TRVEEVAHLLGKPVDDIRHILHLNEHVASLDTPLDIDPNHTVGDSVADDSAGADPVGVLQ 251

Query: 549 ATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 608
              L       +  L  ++ +V+  R+G+      TLE +     +TRER+RQI+ +AL 
Sbjct: 252 ENELNDLVLQWVEQLPEKQRQVVERRYGLKGAEIATLEAIAADLGLTRERVRQIQGEALS 311

Query: 609 KLR 611
           +LR
Sbjct: 312 QLR 314



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 60  PDADDLALSDDTTITDEDAAEAAAAALSSVESEIGRT------TDPVRMYMREMGTVELL 113
           PD D    +++    DE   E+ AAA ++ E + G         D  ++Y+ E+G   LL
Sbjct: 11  PDGD----AEEAFAADEAQDESLAAAATAAEGDDGAPPAYELLNDVTQLYLNEIGAKPLL 66

Query: 114 TREGEIDIAKRIEDG 128
           T   E++ ++R + G
Sbjct: 67  TPAEELEWSRRAKAG 81