Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score =  673 bits (1736), Expect = 0.0
 Identities = 362/622 (58%), Positives = 450/622 (72%), Gaps = 17/622 (2%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           +++LK L+  GKE+G+LTYAE+NDHLP ++VD+EQ+E II   NDMGI+V + AP A+DL
Sbjct: 45  KTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDL 104

Query: 66  ALSDDTTIT--DEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 123
            +SD+      DE+  E A AALS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 105 LMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 164

Query: 124 RIEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHI 183
           RIEDG+  +  AI+  P TI  IL   ++V+ EE+R+ ++I G +DPN  E         
Sbjct: 165 RIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAE--------- 215

Query: 184 GSELSEADLADEDDAVVEDEDEDEDEDGDGES-SDSEEEVGIDPELAREKFNELRGKFQN 242
             EL+  +   E D  VED D DE+E G+G + S S  ++  D   A E+F  ++  +  
Sbjct: 216 -EELAAEEAVVEGDDEVEDGD-DEEEGGEGAAVSASLLQLKTD---ALERFATIKTLYGK 270

Query: 243 LQLAVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKA 302
              A+   G       +    +       R T K  + L +++R+ +D VR +ER + + 
Sbjct: 271 AHKALVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQEL 330

Query: 303 VVEVAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQE 362
            V    MP+  FI  F GNE N EW++K +A  K Y   +      I+   +KL  ++  
Sbjct: 331 CVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDH 390

Query: 363 TSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 422
             + ++ +KDI+++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNI
Sbjct: 391 IGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 450

Query: 423 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 482
           GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+
Sbjct: 451 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 510

Query: 483 LQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLEL 542
           LQE G EP P  LA +M+MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT    
Sbjct: 511 LQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTA 570

Query: 543 PLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI 602
           P+D+A  + L+  T+++L  LTPREAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQI
Sbjct: 571 PVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQI 630

Query: 603 EAKALRKLRHPSRSEVLRSFLD 624
           EAKALRKLRHPSRS+ LRSFLD
Sbjct: 631 EAKALRKLRHPSRSDKLRSFLD 652