Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., alternative sigma factor RpoH from Dechlorosoma suillum PS

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 387 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 446
           A +++V ++LRLVI+IA+ Y   GL   DLIQEGNIGLMKAV +F+  RG +  ++A  W
Sbjct: 51  AARQLVLSHLRLVIAIARGYLGYGLPHADLIQEGNIGLMKAVKRFDPSRGVRLVSFAMHW 110

Query: 447 IRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQM-PEDK 505
           I+  I   I    R +++     +     N  S +   +       +E+A ++ +  E+ 
Sbjct: 111 IKAEIHEYILKNWRLVKVATTKAQRKLFFNLRSLKASSDTLTPAEVDEIAYKLGVKAEEV 170

Query: 506 IRKVLKIAKEPISMETPIGDDEDSHLGD--FIEDTTLE--LPLDSATATSLKA-ATRDVL 560
           +    ++    ++++    D++D+ +    ++ D+  E    L++     L++   +  L
Sbjct: 171 VEMETRMGGRDLALDGSPDDEDDNRVAPIAYLADSAAEPTQVLEAREYDRLQSDGLQQAL 230

Query: 561 AGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 611
           AGL  R  +++  R+ +D     TL ++  +F V+ ERIRQIE KAL+K++
Sbjct: 231 AGLDERSRRIVEARW-LDEENPATLHDLAAEFGVSAERIRQIEVKALQKMK 280