Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  457 bits (1176), Expect = e-133
 Identities = 270/624 (43%), Positives = 369/624 (59%), Gaps = 50/624 (8%)

Query: 8   QLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLAL 67
           Q+K L+ +GK  G+LT+ EVN  LPAE+   EQ+E+II + + + I +V+T  D   +++
Sbjct: 9   QIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLEIAIVDTEKDGKKISV 68

Query: 68  SDDTTITDEDAAEAAAAALSSVESE--IGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
           S   +  +E + E     +   ES     R+TDPVRMY+REMG V LL R+GE+ IAK+I
Sbjct: 69  SPGES-EEEPSGEPGLDLVEDEESADYSSRSTDPVRMYLREMGAVPLLDRDGEVQIAKKI 127

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGS 185
           E G   V  A+ E P  +  ++   + ++   ++L D++                     
Sbjct: 128 ELGEQDVLYALVEVPVAVEELINVGEDLKQNRIKLKDVVK-------------------- 167

Query: 186 ELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNLQL 245
                         +E++D  EDE       +    V +  +  +  + + R  +  L  
Sbjct: 168 -------------TIEEDDPSEDE------MNQRSRVILLLDEIKHTYKKKRKVYAKLDD 208

Query: 246 AVNEFGRDSHQASEASDLVLDI---FREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKA 302
                 R +    E      DI    R+ +L     D ++ET+   + ++   +R +   
Sbjct: 209 CCTLERRVTAIQKEILGFKEDIVNRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAY 268

Query: 303 VVEVAK--MPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIE 360
           ++   K  +  +    +    E N       L      V ++   +E I   I+ L  ++
Sbjct: 269 ILSTGKTQVEIQDIFRMLEAREMNPVAASAALGMT---VEELFSFKEMIIGKIEILNRLQ 325

Query: 361 QETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG 420
            +   +V  ++++  R+  G   A RAK+E++ +NLRLV+SIAKKYTNRGLQFLDLIQEG
Sbjct: 326 DKCCHNVTDLEEVLWRIKRGNTHAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEG 385

Query: 421 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISR 480
           NIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR
Sbjct: 386 NIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSR 445

Query: 481 QMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTL 540
            ++QE+GR+P PEE+AERM  P DK++KVLKIAKEPIS+ETPIGD+EDS LGDFIED   
Sbjct: 446 YLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKA 505

Query: 541 ELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR 600
             P +    T L      VLA LTPRE +VLR RFGI   +DHTLEEVGK F+VTRERIR
Sbjct: 506 VAPAEEVVNTKLSEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIR 565

Query: 601 QIEAKALRKLRHPSRSEVLRSFLD 624
           QIEAKALRKLRHP RS++LRS+ +
Sbjct: 566 QIEAKALRKLRHPVRSQMLRSYYE 589