Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., putative RNA polymerase, sigma 70 family subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  122 bits (305), Expect = 5e-32
 Identities = 87/252 (34%), Positives = 139/252 (55%), Gaps = 21/252 (8%)

Query: 372 DISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ-FLDLIQEGNIGLMKAVDK 430
           D++RR+   E     A   +V ++LRLV+ IA  +  R +Q  LDLIQEGN+GLM+AV+K
Sbjct: 215 DLARRVQ--EQGDSDAAFRLVTSHLRLVVKIAMDFQRRWMQNVLDLIQEGNVGLMRAVNK 272

Query: 431 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE--TINKLNRISRQMLQEMGR 488
           F+  +G KFS YA +WI+  I + I D  R ++I     +      LN+  RQ L   G 
Sbjct: 273 FDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQAQRKLFYNLNK-ERQRLIAQGY 331

Query: 489 EPLPEELAERMQMP-EDKIRKVLKIAKEPISMETPIGDDEDS--------HLGDFIEDTT 539
           +P    L+E++ +  E  I    ++    +S++  +G+D            LG  IE+T 
Sbjct: 332 DPDATILSEKLNVTVEQVIEMEQRLDSSDMSLDITVGEDSGGATRMDFLPALGPGIEETL 391

Query: 540 LELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI 599
                +S  A  ++   + +L  L+ +EA +L+ R   +     TL E+G+++D+TRER+
Sbjct: 392 ----ANSEIARMVQDRVQTILPKLSDKEAYILQHRLLSEQPV--TLREIGEKYDITRERV 445

Query: 600 RQIEAKALRKLR 611
           RQIEA+ L+KLR
Sbjct: 446 RQIEARLLQKLR 457



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 32  PAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALSDDTTITDEDAAEAAAAALSSVES 91
           P E  D E  +D + +  D      + A D D L   DD+     DA + A A+  S   
Sbjct: 119 PDEADDDESADDELDIDFD---GPGDDAIDVDLLHGDDDSPPARHDAHDGADASDESAGR 175

Query: 92  EIG-----------RTTDPVRMYMREMGTVELLTREGEIDIAKRIED 127
                          T D + +Y+RE+    LL  + E D+A+R+++
Sbjct: 176 HRSLPVLRPAMPGASTRDSLHLYLREISRFPLLKPDEEFDLARRVQE 222