Pairwise Alignments

Query, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase, sigma 70 subunit, RpoD from Marinobacter adhaerens HP15

 Score =  777 bits (2006), Expect = 0.0
 Identities = 402/620 (64%), Positives = 475/620 (76%), Gaps = 16/620 (2%)

Query: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65
           +S+LK L+ RGKEQGYLTYAEVNDHLP +I D +QVEDII+MINDMGI+V E  PDAD L
Sbjct: 7   KSRLKDLIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIQVCEETPDADTL 66

Query: 66  ALSDDTTITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRI 125
            +++  +  DE AA  AAAAL++VE++ GRTTDPVRMYMREMGTVELLTREGEI IAKRI
Sbjct: 67  LMTEGDSTADEAAAAEAAAALAAVETDAGRTTDPVRMYMREMGTVELLTREGEIVIAKRI 126

Query: 126 EDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHIGS 185
           E+GI  V +A+A +PGT   +++ +DR+   E R++D+++GF+DP+D E           
Sbjct: 127 EEGIRDVMAAVAHFPGTAGTVIQAYDRILENEGRISDIVTGFLDPDDAEP---------- 176

Query: 186 ELSEADLADEDDAVVEDEDEDEDEDGDGESSDSEEEVGIDPELAREKFNELRGKFQNLQL 245
                    ED      +D D D D D +SS+ E + G DPE  R +F  L  K +    
Sbjct: 177 ------FMGEDTTPESSDDSDSDSDDDDDSSEEETDNGPDPEETRLRFELLNEKLEAANK 230

Query: 246 AVNEFGRDSHQASEASDLVLDIFREFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVE 305
           A+ + GR   +  EA + +  +F  F+L  K FD LV  +R++ D VR  ER +M+  V 
Sbjct: 231 ALAKHGRSDKKTQEALNELGQVFAPFKLANKAFDELVNVVRSTNDLVRENERAIMQICVR 290

Query: 306 VAKMPKKSFIALFTGNESNEEWLDKVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETSL 365
             KMP+K FI  F GNE+N +W DK+  S KPY A + E+ +E+ R  +++Q ++ E  L
Sbjct: 291 ECKMPRKDFIKSFPGNETNLDWADKIAKSKKPYAAPLAERIDEVVRLQKRIQNVQTEVDL 350

Query: 366 SVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 425
            V  IK+I+RR+SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
Sbjct: 351 DVADIKEINRRVSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 410

Query: 426 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 485
           KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
Sbjct: 411 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 470

Query: 486 MGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD 545
           MGREP PEEL ERM+MPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIED     P+D
Sbjct: 471 MGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDIQALSPVD 530

Query: 546 SATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 605
           SATA  L+ ATR VLAGLT RE+KVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAK
Sbjct: 531 SATAEGLREATRSVLAGLTARESKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAK 590

Query: 606 ALRKLRHPSRSEVLRSFLDE 625
           ALRKLRHPSRS+ LR F+D+
Sbjct: 591 ALRKLRHPSRSDHLRGFIDD 610